104250

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 336260..336758 Replicon chromosome
Accession NZ_CP028828
Organism Vibrio cholerae strain N16961

Toxin (Protein)


Gene name - Uniprot ID Q9KMK7
Locus tag N16961_RS15650 Protein ID WP_000589156.1
Coordinates 336260..336526 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID Q9KMK6
Locus tag N16961_RS15655 Protein ID WP_000643598.1
Coordinates 336513..336758 (+) Length 82 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N16961_RS15590 331681..331887 + 207 Protein_294 DUF3709 domain-containing protein -
N16961_RS15595 332087..332188 + 102 WP_001921603.1 hypothetical protein -
N16961_RS15600 332178..332564 + 387 WP_000703163.1 VOC family protein -
N16961_RS15605 332759..333010 + 252 WP_001890111.1 TIGR03643 family protein -
N16961_RS15610 332983..333132 + 150 WP_071908333.1 DUF3265 domain-containing protein -
N16961_RS15615 333224..333466 + 243 WP_000107461.1 hypothetical protein -
N16961_RS15620 333718..333996 + 279 WP_000280324.1 DUF3709 domain-containing protein -
N16961_RS19805 334371..334514 + 144 Protein_301 DUF645 family protein -
N16961_RS19810 334568..334606 + 39 WP_082798268.1 hypothetical protein -
N16961_RS15635 334818..335285 + 468 WP_001289288.1 OsmC family protein -
N16961_RS15640 335413..336075 + 663 WP_000960654.1 hypothetical protein -
N16961_RS15650 336260..336526 + 267 WP_000589156.1 BrnT family toxin Toxin
N16961_RS15655 336513..336758 + 246 WP_000643598.1 hypothetical protein Antitoxin
N16961_RS15660 336854..337648 + 795 WP_001911581.1 hypothetical protein -
N16961_RS19825 337751..337879 + 129 WP_071908338.1 general secretion pathway protein GspI -
N16961_RS15675 337940..338122 + 183 WP_000923182.1 DUF645 family protein -
N16961_RS15680 338338..339342 + 1005 WP_000964920.1 LD-carboxypeptidase -
N16961_RS15685 339495..339854 + 360 WP_001071541.1 VOC family protein -
N16961_RS15690 340127..340360 + 234 WP_001890112.1 DUF3709 domain-containing protein -
N16961_RS15695 340628..341134 + 507 WP_000393074.1 hypothetical protein -
N16961_RS15700 341291..341677 + 387 WP_000703163.1 VOC family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 306977..438073 131096
inside Integron - - 312057..437697 125640


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(6-81)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 89 a.a.        Molecular weight: 10092.34 Da        Isoelectric Point: 7.3171

>T104250 WP_000589156.1 NZ_CP028828:336260-336526 [Vibrio cholerae]
MIKFEFDENKSRSNLEKHGIDFHTAQGLWNDSDLIEIPANTSDEPRYLVVGLLNGKHWSGVITYRGTNIRIISVRRSRKA
EVSLYESA

Download         Length: 267 bp

>T104250 NZ_CP028828:336260-336526 [Vibrio cholerae]
ATGATTAAATTTGAATTTGATGAAAACAAAAGCAGAAGTAATCTCGAAAAGCACGGTATTGATTTTCATACAGCTCAAGG
ATTGTGGAATGATTCAGATCTTATCGAGATCCCTGCTAACACGAGTGATGAGCCCAGATATTTGGTTGTCGGCTTACTAA
ACGGTAAGCATTGGTCAGGAGTAATTACCTACCGAGGTACGAATATCAGGATCATCTCAGTTCGGCGTTCACGGAAAGCG
GAGGTAAGCCTTTATGAAAGCGCATGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9478.77 Da        Isoelectric Point: 6.4832

>AT104250 WP_000643598.1 NZ_CP028828:336513-336758 [Vibrio cholerae]
MKAHEFDAKFESDDDDIVMDLDLSQAKRPMHKQKRVNVDFPAWMLESLDREASRIGVTRQSIIKIWLAERLESVSHHSSV
R

Download         Length: 246 bp

>AT104250 NZ_CP028828:336513-336758 [Vibrio cholerae]
ATGAAAGCGCATGAATTTGATGCCAAGTTTGAAAGTGACGACGATGATATCGTAATGGACTTGGATCTATCGCAAGCTAA
AAGACCGATGCATAAGCAAAAACGAGTCAATGTAGATTTTCCAGCCTGGATGCTTGAGTCCTTGGACAGAGAAGCGAGTC
GTATTGGTGTAACACGTCAATCAATCATTAAAATTTGGCTGGCAGAAAGGTTAGAGAGCGTGTCTCATCATTCAAGTGTG
AGATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A271VMP7


Antitoxin

Source ID Structure
AlphaFold DB A0A271VME2

References