Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00049  |
| T6SS type | Type i4b |
| Strain | Chromobacterium violaceum ATCC 12472 |
| Replicon (RefSeq) | chromosome (NC_005085) |
| Location | 4278258..4321021 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] [2] Stauff DL, Bassler BL. et al (2011) Quorum sensing in Chromobacterium violaceum: DNA recognition and gene regulation by the CviR receptor.. J Bacteriol. 193(15):3871-8. [PudMed:21622734] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| CV_RS22390 | 4273307..4274488 | - | 1182 | WP_011137500.1 | SDR family oxidoreductase | ||
| CV_RS19590 | 4274545..4275618 | - | 1074 | WP_080509138.1 | polyprenyl synthetase family protein | ||
| CV_RS19595 | 4275660..4276589 | - | 930 | WP_011137502.1 | hypothetical protein | ||
| CV_RS19600 | 4276591..4277475 | - | 885 | WP_011137503.1 | UbiA family prenyltransferase | ||
| CV_RS19605 | 4277480..4278247 | - | 768 | WP_011137504.1 | HAD hydrolase-like protein | ||
| CV_RS19610 | 4278258..4279427 | - | 1170 | WP_158303334.1 | polyprenyl synthetase family protein | ||
| CV_RS19615 (asnB) | 4279442..4281430 | - | 1989 | WP_011137506.1 | asparagine synthase (glutamine-hydrolyzing) | ||
| CV_RS19620 | 4281435..4282250 | - | 816 | WP_011137507.1 | isopentenyl phosphate kinase family protein | ||
| CV_RS19625 | 4282261..4282986 | - | 726 | WP_011137508.1 | (5-formylfuran-3-yl)methyl phosphate synthase | ||
| T6CP000412 | TssA | CV_RS19630 (tssA) | 4283686..4284771 | - | 1086 | WP_011137510.1 | type VI secretion system protein TssA |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0120 | CV_RS20220 (CviR) | protein | QS regulatory pathway | Chromobacterium violaceum ATCC 12472 | chromosome (NC_005085) | 4426186..4427046 (+) | 1169634970 | CV_RS06990 (VgrG) promotor (↓) |
| REG0121 | CV_RS23145 (CviI) | protein | QS regulatory pathway | Chromobacterium violaceum ATCC 12472 | chromosome (NC_005085) | 4426967..4427620 (-) | 499450174 | CV_RS20220 (CviR) (↓) |
Showing 1 to 2 of 2 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||