SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000425
Component protein type	TssI
T6SS ID (Type)	T6SS00049 (Type i4b)
Strain	Chromobacterium violaceum ATCC 12472
Replicon	chromosome
Sequence	Protein sequence (873 a.a.); Nucleotide sequence (2619 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603 [2] Stauff DL, Bassler BL. Quorum sensing in Chromobacterium violaceum: DNA recognition and gene regulation by the CviR receptor. J Bacteriol. 2011 Aug;193(15):3871-8. doi: 10.1128/JB.05125-11. Epub 2011 May 27. PMID: 21622734

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	CV_RS19755
Coordinate (Strand)	4312701..4315319 (+)
NCBI ID	WP_011137533.1
RefSeq	NC_005085
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
Phage_GPD	PF05954.13	3.1e-77	43..363
DUF2345	PF10106.11	5.9e-56	688..840
T6SS_Vgr	PF13296.8	3.7e-37	529..636
Phage_base_V	PF04717.14	1.2e-15	426..502

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 873 a.a.

						>T6CP000425 NC_005085:4312701-4315319 [Chromobacterium violaceum ATCC 12472] [TssI]
MDLTSLLSSFASAFTQDQRLLTLELGSGQVAAEQLLPQSLNGEEGVSQAYRYQLTCLSPDGAIELKTLLGQAARIGIADA
QGQETIRCGVVSQARLMGSDGGFAQYGLTIEPPIALLRHRKTSRVFQDLSVPDIVQQIVHEHQAANPVFARAQSIEFKVG
PAQPRSYCLQYREDDFSFIVRLLHEEGYAWRFEHVDGDSPQVKLVVFDDAYSLPPAEVERVRFHRSDATEEEDGLTDWSA
ARQIVPGNVALATFDYQPVSTQHTGDSSQIDQGPGGQALQSSLQDYDPQGLYYAGDAEQLSHYARLRQQAHDLQAKTFEG
AGSIRGLTAGQWFRLDDHPAHEADSHEQREFVVTGQTLQVRNNLPTDLQSILPTGDKADAPFRTRIQAQRRGIPLTPAYA
GTEHAKPKSRGVQTATVVGPAGEEVHTDQHGRIKVQFHWQRPDEHPTIGAALDDKSSCWLRVAMPSAGAGWGHQFIPRIG
QEVLVDFIEGDIDRPVITGVLYNGSHPTPDFSGAGSLPANKTLSGIKSKEHQGGGYNELLFDDTPGEVRAKLSSEPGKTQ
LNQGYLAHPRSNGKAQPRGDGFELRTDHHGAIRAAHGLLLTTEAQNGASGKQLAREHAQSQLDAALSLSQALAETASGQL
ADTMETGPDEIGPDNAKAGKKTDGHLQHHADALKAWEAGSNTDKDGKTAKDQAGQQPLLVLSAPAGIASLTEQSQTVSAG
QNLNLIAQRDANHTTGRRWLHNVGQHISLFVAGVKDKVALKLIAAKGKVQVQAQSDAMELTADKDVTIMSCKERIVVNAK
DEILLTAGGAYIRLKGGNIEVHAPGTVSVKAAQHKLSGPDNMTIPMPVFPGKQFCLQCMLNAIKSGSPLAGQ*					

Nucleotide sequence: 2619 bp

						>T6CP000425 NC_005085:4312701-4315319 [Chromobacterium violaceum ATCC 12472] [TssI]
ATGGATCTGACCAGCTTACTTTCCTCCTTCGCCTCCGCCTTTACCCAGGACCAGCGCCTGCTCACCCTGGAACTGGGCAG
CGGACAGGTCGCCGCCGAGCAGCTGCTGCCGCAAAGCCTCAATGGCGAAGAGGGCGTGTCCCAGGCCTACCGCTATCAAC
TCACCTGCCTCTCCCCCGACGGCGCCATCGAACTCAAGACCCTGCTCGGCCAGGCCGCCCGCATCGGCATCGCCGACGCC
CAGGGCCAGGAGACCATCCGCTGCGGCGTGGTCAGCCAGGCCCGGCTGATGGGTTCCGACGGCGGCTTCGCCCAGTACGG
CCTCACCATCGAGCCGCCGATCGCGCTGTTGCGCCACCGCAAGACTTCGCGCGTGTTCCAGGACTTGAGCGTGCCGGACA
TCGTCCAGCAGATCGTCCACGAGCATCAGGCGGCCAACCCGGTGTTCGCCCGCGCGCAGAGCATCGAGTTCAAGGTCGGC
CCGGCGCAGCCGCGCAGCTATTGCCTGCAGTACCGCGAGGACGACTTCAGCTTCATCGTCCGCCTGCTGCACGAGGAGGG
TTACGCCTGGCGCTTCGAGCACGTGGACGGAGACAGCCCCCAGGTCAAGCTGGTGGTGTTCGACGACGCCTACAGCCTGC
CGCCGGCCGAGGTGGAGCGGGTGCGCTTCCACCGCAGCGACGCGACGGAAGAGGAAGACGGCCTCACCGACTGGAGCGCC
GCGCGCCAGATCGTGCCCGGCAACGTGGCGCTGGCCACCTTCGACTACCAGCCGGTGTCCACCCAGCACACCGGCGACAG
CAGCCAGATCGACCAGGGCCCGGGCGGCCAGGCGCTGCAGTCCAGCCTGCAGGACTACGATCCGCAGGGCCTGTACTACG
CCGGCGACGCCGAGCAGTTGAGCCACTACGCCCGGCTGCGCCAGCAGGCGCACGACCTGCAGGCCAAGACCTTCGAAGGC
GCCGGCTCCATCCGCGGCCTGACCGCCGGCCAGTGGTTCCGCCTGGACGACCACCCGGCGCACGAGGCCGACAGCCACGA
ACAGCGCGAATTCGTCGTCACCGGCCAGACGCTGCAGGTGCGCAACAACCTGCCGACCGATCTGCAGTCCATCCTGCCGA
CGGGCGACAAAGCCGACGCCCCGTTCCGCACCCGCATCCAGGCCCAGCGCCGCGGCATCCCGCTGACCCCGGCCTATGCC
GGCACAGAACACGCCAAACCGAAATCGCGCGGCGTCCAGACCGCCACCGTGGTCGGCCCGGCCGGCGAGGAAGTCCACAC
CGATCAACACGGCCGCATCAAGGTGCAATTCCACTGGCAGCGGCCGGACGAACACCCGACCATCGGCGCCGCGCTGGACG
ACAAATCCTCCTGCTGGCTGCGCGTGGCGATGCCGTCGGCCGGCGCCGGCTGGGGCCACCAGTTCATCCCGCGCATCGGC
CAGGAAGTGCTGGTCGATTTCATCGAAGGCGACATCGACCGGCCGGTGATCACCGGCGTCTTGTACAACGGCAGCCACCC
CACGCCCGACTTCAGCGGCGCCGGCAGCCTGCCGGCCAACAAGACCCTGTCCGGCATCAAGTCGAAAGAACACCAGGGCG
GCGGCTACAACGAGCTGCTGTTCGACGACACCCCCGGCGAAGTGCGCGCCAAGCTGTCCAGCGAGCCGGGCAAGACCCAG
CTCAACCAGGGCTACCTCGCCCACCCGCGCAGCAACGGCAAGGCCCAGCCGCGCGGCGACGGCTTCGAGCTCAGAACCGA
CCACCACGGCGCCATCCGCGCCGCCCACGGCCTGCTGCTCACCACCGAAGCGCAGAACGGCGCGTCCGGCAAACAACTGG
CGCGCGAGCACGCGCAAAGCCAGCTCGACGCCGCCTTGAGCCTATCGCAAGCCTTGGCCGAAACCGCCAGCGGCCAGTTG
GCCGACACCATGGAAACCGGGCCCGACGAAATCGGCCCGGACAACGCCAAGGCCGGCAAGAAAACCGACGGCCACCTGCA
ACACCACGCCGACGCGCTGAAGGCTTGGGAAGCCGGCAGCAACACCGATAAGGACGGCAAAACCGCCAAGGACCAAGCCG
GCCAGCAGCCGCTGCTGGTGCTGTCCGCCCCAGCCGGCATCGCCAGCCTGACCGAACAAAGCCAGACCGTCTCCGCCGGC
CAGAACCTGAACCTGATCGCCCAGCGCGACGCCAACCACACGACGGGTCGGCGCTGGCTGCACAACGTCGGCCAGCACAT
CAGCCTGTTTGTGGCCGGGGTGAAGGACAAGGTGGCGCTAAAGCTGATCGCGGCCAAGGGCAAGGTACAGGTGCAGGCGC
AGAGCGACGCGATGGAGCTGACGGCGGATAAGGATGTGACGATCATGTCCTGCAAGGAACGCATCGTCGTCAATGCCAAG
GACGAGATTCTGTTGACCGCAGGCGGCGCTTATATCCGTCTCAAGGGCGGCAATATCGAAGTGCACGCACCCGGCACCGT
AAGCGTGAAAGCCGCCCAGCACAAGCTGAGCGGACCCGACAATATGACCATCCCGATGCCAGTTTTCCCAGGCAAGCAGT
TCTGCTTGCAGTGCATGCTGAATGCGATCAAATCCGGCTCGCCCTTAGCCGGCCAATAA					