SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000420
Component protein type	TssM
T6SS ID (Type)	T6SS00049 (Type i4b)
Strain	Chromobacterium violaceum ATCC 12472
Replicon	chromosome
Sequence	Protein sequence (1261 a.a.); Nucleotide sequence (3783 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603 [2] Stauff DL, Bassler BL. Quorum sensing in Chromobacterium violaceum: DNA recognition and gene regulation by the CviR receptor. J Bacteriol. 2011 Aug;193(15):3871-8. doi: 10.1128/JB.05125-11. Epub 2011 May 27. PMID: 21622734

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	CV_RS19725
Coordinate (Strand)	4304734..4308516 (-)
NCBI ID	WP_011137527.1
RefSeq	NC_005085
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
IcmF-related_N	PF14331.8	7.3e-77	185..441
IcmF-related	PF06761.14	1.5e-74	490..880
IcmF_C	PF06744.14	1.5e-19	1131..1222

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 1261 a.a.

						>T6CP000420 NC_005085:c4308516-4304734 [Chromobacterium violaceum ATCC 12472] [TssM]
VLHKGWLRNAKVASAIGFLILIALIWWLGPWLGLKSVEARLGWIVAVMIVWVLALLIGQALARRAGGLLEGMLRRQADDA
VINASADKRAEVTLLRQRLLGAIDTLKKSNLGSARGSAALYELPWYMIIGHPAAGKSSAILQSGLSFPFSDKSGIQGVGG
TRNCDWFFSTEGVLLDTAGRYATESEDRTEWLAFLKLLKKHRAKAPVNGIMVAISLPELAQHNSEGFVLYARQVRERIHE
VCNTFGLMVPIYLVFTKLDLLGGFAQFFHDAGEEERSRVWGATLSADQGTGFDAGAVVSQQFEQLYRGLVQMGEEKLVGA
RGDAVKSAHFAFPIEFHGLQEAVVKFVRLLFEEDPYHSRPLLRGFYFTSALQEGVPRIVTAGRVQGQFDLSSAGIDKHQA
PASYSYFLRGLFREVLFPDQHLIFQQTRPSGSRWRLVGMAAGLVSLAAVAGAWTWSFVGNQQMIAQVNAERVQAQKLAAS
GQLYDRLNGLLILQRRLEELQNYRRNGEPWQVGLGLYQGEELERNLRKAYFAGLKDVMLRPVQKNLETTLAALKPGAVQP
VAVTQPPKPEPKPEAKPAPAPKPLKPYKPRPKHGLPNIQLGALELPQRATTAKLDASAPAAGEPAAESGQPQKSQKLDVA
YNALKTYLMLHDRRRMEEAHLADQLPRYWRPWLESQRGEYPVSEVMGQAEKLVAFYVSQIKEQDLPLIDNDVKVVADARD
VLRGSFKQLSAQERVYNEIKARANTRFAPLTVARILDNRDMDIMASSQMVEGAYTREAWNTYVRAAIDEASKGTIRSDDW
VLASSTQDDLGKDGDVEKNRAALEALYRAQYIAAWHKFLAGVVVRDITNPAQSASAMTRLADKQNSPIKLILARAAQETS
WDNPSELNRSLETAKRSVLEKTTEFFKSGDAPAAKNEKQYGVVGAHFAGVAALVKGDNSPLNGYLDQLGKLKVKMAAIAT
TDQPGPQARTALQSTLSGSGSELGDTLSYVDNTLLAGATSDTVEMVRPMLLRPLSQSYSALLGPVAQDINQAWANEVLPQ
WKQLASKYPFSDSSSSASVADISRFVKANDGTLDKFINKYLTGLVQKKGDELVPRVWGNQGVRFNPQFLSGVSSLMALAN
TQLQDGENSRFELQPLPTPGLSEIVLSIDGQELRYRNGPQQWQPFNWPGSNGEGARIQVVNYAGSSTVVGNQSGRMGLMR
LLAGAKVSQDGDGAQLTWALPKGSGAEGQTVRFNFRMLGGVNPLQLNRLYKLTLPERVTL*					

Nucleotide sequence: 3783 bp

						>T6CP000420 NC_005085:c4308516-4304734 [Chromobacterium violaceum ATCC 12472] [TssM]
GTGTTACACAAAGGTTGGCTACGCAATGCCAAGGTGGCGTCTGCCATCGGATTCTTGATCCTGATCGCGCTGATATGGTG
GCTGGGTCCCTGGCTGGGCCTGAAGTCGGTCGAGGCGCGCCTGGGCTGGATCGTGGCGGTGATGATCGTATGGGTGCTGG
CGCTGCTGATAGGCCAGGCGCTGGCCCGCCGCGCCGGCGGCTTGCTGGAAGGCATGCTGCGCCGTCAGGCCGACGACGCG
GTGATCAACGCCAGCGCCGACAAGCGCGCGGAGGTGACGCTGCTGCGCCAGCGTCTGCTGGGCGCGATCGACACGCTGAA
GAAGTCCAATCTCGGCAGCGCCCGCGGCAGCGCGGCGCTGTACGAATTGCCGTGGTACATGATCATTGGTCATCCGGCCG
CCGGCAAAAGTTCCGCCATCCTGCAGTCCGGTCTGAGCTTCCCGTTCAGCGACAAGAGCGGCATTCAGGGCGTGGGCGGC
ACCCGCAACTGCGACTGGTTCTTCTCCACCGAGGGCGTGCTGCTTGACACCGCCGGCCGTTACGCGACCGAGAGCGAGGA
CCGCACCGAGTGGCTGGCCTTCCTCAAGCTGTTGAAAAAGCACCGCGCCAAGGCGCCGGTCAACGGCATCATGGTGGCGA
TCAGCCTGCCGGAGCTGGCCCAGCACAACAGCGAAGGTTTCGTGCTCTACGCGCGCCAGGTGCGCGAGCGCATCCACGAA
GTGTGCAACACCTTCGGCCTGATGGTGCCGATTTACCTGGTATTCACCAAGCTCGACCTGTTGGGCGGCTTCGCCCAGTT
CTTCCACGATGCCGGCGAGGAGGAGCGCTCCCGGGTATGGGGCGCGACGCTGTCCGCCGACCAGGGCACCGGCTTCGATG
CCGGCGCCGTCGTGTCGCAGCAGTTCGAGCAGCTGTACCGCGGCCTGGTGCAGATGGGCGAGGAGAAACTGGTGGGCGCG
CGCGGCGACGCGGTGAAATCCGCCCACTTCGCCTTCCCGATCGAATTCCACGGCCTGCAGGAGGCGGTGGTCAAGTTCGT
CCGCCTGCTGTTCGAGGAGGATCCCTACCATTCCCGTCCGCTGCTGCGCGGCTTCTATTTCACCAGCGCCTTGCAGGAAG
GCGTGCCGCGCATCGTGACCGCAGGCCGCGTGCAGGGCCAGTTCGACCTGTCCTCCGCGGGCATCGACAAGCATCAGGCG
CCTGCCTCGTACAGCTACTTCCTGCGCGGCCTGTTCCGCGAAGTGCTGTTCCCCGACCAGCACCTGATCTTCCAGCAGAC
GCGCCCGAGCGGCAGCCGCTGGCGCCTGGTCGGCATGGCGGCCGGCCTGGTGTCGCTGGCAGCGGTGGCCGGCGCGTGGA
CCTGGTCCTTCGTCGGCAATCAGCAGATGATCGCCCAGGTGAACGCCGAGCGCGTCCAGGCGCAGAAACTGGCCGCGTCC
GGCCAGCTGTACGACCGCCTGAACGGCCTGCTGATCCTGCAGCGCCGTCTGGAGGAGCTGCAGAATTACCGCCGCAACGG
CGAGCCGTGGCAAGTCGGCCTGGGCCTGTATCAAGGTGAGGAGCTGGAGCGCAATCTGCGCAAGGCCTATTTCGCCGGCC
TGAAGGACGTGATGCTGCGCCCGGTGCAGAAGAATCTGGAGACCACGCTGGCGGCGCTGAAACCGGGCGCGGTGCAGCCG
GTGGCGGTGACCCAACCGCCCAAGCCGGAGCCGAAGCCGGAAGCGAAGCCGGCCCCTGCGCCGAAGCCGCTCAAGCCGTA
CAAGCCGCGTCCCAAGCATGGTTTGCCGAACATTCAGCTGGGCGCGCTGGAGCTGCCGCAGCGTGCGACTACCGCCAAGC
TCGATGCTTCCGCGCCGGCCGCGGGCGAGCCTGCGGCGGAAAGTGGCCAGCCGCAGAAGTCGCAAAAGCTCGACGTCGCT
TACAACGCGCTGAAAACCTATCTGATGCTGCATGACCGCCGCCGCATGGAGGAAGCGCACCTGGCCGACCAGCTGCCGCG
CTACTGGCGCCCGTGGCTGGAGAGCCAGCGCGGCGAGTATCCGGTCAGCGAGGTGATGGGCCAGGCCGAGAAGCTGGTGG
CTTTCTACGTCAGCCAGATCAAGGAGCAGGACCTGCCGCTGATCGACAACGACGTCAAGGTCGTCGCCGACGCGCGCGAC
GTGCTGCGCGGCTCGTTCAAGCAGCTGTCCGCCCAGGAGCGCGTGTACAACGAGATCAAGGCGCGCGCCAACACCCGCTT
CGCGCCGCTGACCGTCGCCCGCATCCTCGACAACCGCGACATGGACATCATGGCCAGCAGCCAGATGGTGGAGGGCGCCT
ACACCCGCGAGGCGTGGAACACCTATGTCCGCGCCGCCATCGACGAGGCGAGCAAGGGGACCATCCGCAGCGACGACTGG
GTGCTGGCGTCGTCCACCCAGGACGACCTCGGCAAGGACGGCGACGTGGAGAAGAACCGCGCCGCGCTGGAAGCGCTGTA
CCGCGCCCAGTACATCGCCGCCTGGCACAAGTTCCTGGCCGGCGTGGTGGTGCGCGACATCACCAACCCGGCGCAGTCGG
CGTCGGCGATGACCCGTCTTGCCGACAAGCAGAACTCGCCGATCAAGCTGATCCTGGCCCGGGCGGCGCAGGAAACTTCC
TGGGACAATCCGTCCGAGCTGAACCGCTCGCTGGAGACCGCCAAGCGCTCGGTGCTGGAGAAGACCACCGAGTTCTTCAA
GAGCGGCGATGCGCCGGCAGCCAAGAACGAAAAACAGTACGGCGTCGTCGGTGCGCACTTCGCAGGCGTGGCCGCGCTGG
TCAAGGGCGACAATTCGCCGCTCAACGGCTATCTGGACCAACTCGGCAAGCTGAAGGTGAAGATGGCGGCGATCGCCACC
ACCGACCAGCCGGGTCCGCAGGCCCGCACCGCGCTGCAGTCCACACTGAGCGGTTCCGGCTCCGAGCTGGGCGATACGCT
GTCCTATGTCGACAACACCCTGCTTGCCGGCGCGACCTCCGACACCGTCGAGATGGTGCGGCCGATGCTGCTGCGTCCGC
TGTCGCAGTCGTACAGCGCCTTGTTGGGCCCGGTGGCGCAGGACATCAACCAGGCCTGGGCCAACGAAGTGCTGCCGCAA
TGGAAACAGCTGGCGAGCAAGTATCCGTTCAGCGACTCCAGCAGCAGCGCGTCGGTGGCCGACATCAGCCGTTTCGTAAA
AGCCAACGACGGCACGCTGGACAAGTTCATCAACAAGTATCTGACCGGCCTGGTGCAGAAAAAGGGCGACGAGCTGGTGC
CGCGCGTATGGGGCAACCAGGGTGTGCGCTTCAATCCGCAGTTCCTCAGCGGCGTCAGCAGCCTGATGGCCCTGGCCAAT
ACCCAGCTGCAGGACGGCGAGAACAGCCGCTTCGAGCTGCAGCCGCTGCCGACGCCGGGCCTATCCGAGATCGTGTTGAG
CATAGACGGCCAGGAGCTGCGCTACCGGAACGGCCCCCAGCAGTGGCAGCCGTTCAACTGGCCGGGCAGCAACGGCGAAG
GCGCGCGCATCCAGGTGGTCAACTACGCGGGCTCCAGCACCGTGGTGGGCAACCAGTCCGGCCGCATGGGCCTGATGCGC
CTGCTGGCGGGCGCCAAGGTCAGCCAGGACGGCGATGGCGCGCAGCTGACGTGGGCGCTGCCCAAGGGCAGCGGCGCGGA
AGGCCAGACCGTTCGCTTCAATTTCCGCATGCTGGGCGGGGTCAATCCGCTGCAGTTGAACCGCCTGTACAAACTGACGT
TGCCCGAGCGCGTGACGTTGTAA					