Detailed information of component protein


Summary

Component ID T6CP000415
Component protein type TssF
T6SS ID (Type) T6SS00049 insolico (Type i4b)
Strain Chromobacterium violaceum ATCC 12472
Replicon chromosome
Sequence Protein sequence (620 a.a.); Nucleotide sequence (1860 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) CV_RS19665
Coordinate (Strand) 4291222..4293081 (-)
NCBI ID WP_011137516.1
RefSeq NC_005085
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.2e-206 1..615
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 620 a.a.    

>T6CP000415 NC_005085:c4293081-4291222 [Chromobacterium violaceum ATCC 12472] [TssF]
MLESLLPYYERELGHLRELSGEFARRYPKIAGRLQMEGDQCADPHTERLIEAFALLASRIHKKLDDDYPEVAESFLDVLY
PHYLQPIPSATIVQFECDPARPEIAKRYRVERGQPVHAPAINGVVCKFRSAYPVDLYPLSLNSAKLELTSGSPYLRQLAP
DAAALLTMEFQTHGGLALNSIGLTSLRFFLDGEPALMHLLYELLLSQVLRIRVGDGSEDPSRSAVLPASAIRPVGFGRDE
GMLEYDERSFMGYRLLTEYFCYPDKFLFVDIAELDKAAVRLDGGKLVLQLVLGDYPDSERHHRLLTQLQAHHLKLGCAPI
VNLFNQPGEPIRVSHQKAGYAVLADGRKQQAYEVIQIRRVVRVEKSGEGESSEEVPPFYATRHGSERQTPRFYWHASREG
SPRAGDKGTDLELHLVDLQFNAVRPAAEVLSLDLLCSNRDLPEQIPFGGSQAAQRTDFSLPGHSVVKRVRLLRKPSATQR
SPLGRAVQWRLISHLSLNYMSIVDSGVAALQEMLALYNLTGSPVNVRQIQGVVGIDSKPAVTRVSGRDFAGFVRGSEIRL
KLDADYYVGGSVYLFASVLERFFALYCAPNSFTRLRVETTQQDQEVAVWPARAGEALVI*

  Nucleotide sequence: 1860 bp    

>T6CP000415 NC_005085:c4293081-4291222 [Chromobacterium violaceum ATCC 12472] [TssF]
ATGCTTGAATCCTTACTACCGTATTACGAACGCGAACTCGGCCACCTGCGGGAGCTGTCGGGCGAGTTCGCGCGCCGCTA
TCCGAAGATCGCCGGCCGGCTGCAGATGGAAGGCGACCAGTGCGCCGACCCGCACACCGAACGGCTGATCGAAGCGTTCG
CGCTGCTGGCTTCGCGCATCCACAAAAAGCTGGACGACGATTATCCCGAGGTGGCGGAAAGCTTCCTGGATGTGCTGTAT
CCGCATTATCTGCAGCCGATTCCGTCGGCCACCATCGTCCAGTTCGAGTGCGATCCGGCGCGGCCGGAGATCGCCAAGCG
CTACCGCGTGGAGCGCGGCCAGCCGGTGCATGCGCCGGCGATCAACGGCGTGGTGTGCAAATTCCGCAGCGCCTACCCGG
TGGACCTGTATCCGCTGTCGCTGAATAGCGCCAAGCTGGAGCTGACCAGCGGCTCGCCCTATCTGCGCCAGTTGGCGCCG
GACGCGGCGGCGCTGCTGACGATGGAGTTCCAGACCCACGGCGGCCTGGCCTTGAACAGCATAGGGCTGACTTCGCTGCG
CTTCTTCCTGGACGGCGAGCCGGCGCTGATGCACCTGCTGTACGAGCTCCTGCTGTCCCAGGTGCTGCGCATCCGCGTCG
GCGATGGCAGCGAGGACCCGTCGCGCAGCGCGGTGCTGCCGGCCTCGGCCATCCGCCCGGTGGGCTTCGGCCGCGACGAG
GGCATGCTGGAGTACGACGAGCGCTCGTTCATGGGCTACCGGCTGCTGACCGAATATTTCTGCTATCCGGACAAGTTCCT
GTTCGTCGACATCGCCGAGCTGGACAAGGCCGCGGTGCGCCTGGATGGCGGCAAGCTGGTGCTGCAGCTGGTGCTGGGCG
ACTACCCGGACAGCGAGCGCCATCACCGGCTGTTGACCCAATTGCAAGCCCATCATCTGAAGCTGGGCTGCGCCCCCATC
GTCAACCTGTTCAACCAGCCCGGCGAGCCCATCCGCGTCAGCCACCAGAAGGCCGGCTACGCGGTGCTGGCCGACGGCCG
CAAGCAGCAGGCTTACGAAGTGATCCAGATCCGCCGCGTGGTGCGGGTGGAGAAGTCCGGCGAGGGCGAAAGCAGCGAGG
AGGTGCCGCCGTTCTATGCCACGCGCCACGGCAGCGAGCGCCAGACGCCGCGCTTCTACTGGCACGCCAGCCGCGAAGGC
TCGCCGCGAGCCGGTGACAAGGGAACGGACCTGGAACTGCATCTGGTGGATCTGCAGTTCAACGCGGTGCGGCCGGCGGC
CGAGGTGCTGAGCCTGGACTTGCTGTGCAGCAACCGCGACCTGCCGGAGCAGATTCCCTTCGGCGGCAGCCAGGCGGCGC
AGCGCACCGATTTCAGCCTGCCCGGCCATTCGGTGGTGAAGCGGGTGAGGCTGCTGCGCAAGCCGTCGGCCACCCAGCGC
AGCCCTTTGGGCCGCGCGGTGCAGTGGCGGCTGATCTCGCATCTGTCGCTGAACTACATGTCCATCGTCGATTCCGGCGT
GGCGGCGCTGCAGGAGATGCTGGCGCTGTACAACCTCACTGGTTCGCCGGTCAACGTGCGCCAGATCCAGGGCGTGGTGG
GCATAGACAGCAAGCCGGCGGTGACGCGCGTCAGCGGCCGCGATTTCGCCGGCTTCGTCCGCGGCAGCGAAATCAGGCTG
AAACTGGACGCCGATTACTATGTCGGCGGCAGCGTCTACTTGTTCGCCTCGGTGCTGGAACGCTTCTTCGCTTTGTACTG
CGCGCCCAACAGCTTCACCCGGTTGCGGGTGGAGACGACGCAGCAGGACCAGGAGGTGGCGGTATGGCCGGCGCGGGCGG
GCGAGGCTTTGGTGATATGA