SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000417
Component protein type	TssD
T6SS ID (Type)	T6SS00049 (Type i4b)
Strain	Chromobacterium violaceum ATCC 12472
Replicon	chromosome
Sequence	Protein sequence (166 a.a.); Nucleotide sequence (498 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603 [2] Stauff DL, Bassler BL. Quorum sensing in Chromobacterium violaceum: DNA recognition and gene regulation by the CviR receptor. J Bacteriol. 2011 Aug;193(15):3871-8. doi: 10.1128/JB.05125-11. Epub 2011 May 27. PMID: 21622734

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	CV_RS19705
Coordinate (Strand)	4301111..4301608 (-)
NCBI ID	WP_011137524.1
RefSeq	NC_005085
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	4.6e-46	6..138

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 166 a.a.

						>T6CP000417 NC_005085:c4301608-4301111 [Chromobacterium violaceum ATCC 12472] [TssD]
MAFDAFLKIDGIPGESGDDKHKDWIEIQSFSHKLEQPAQASASTAGGATAERVNHGVYEITHFLDKASPKIYEACCTGKH
IKEITIELCRAGGDKVKYMEIKMEQVLISKVEPHGSATDSGFPAEKVSFSYGKIKWTYTQQKRADGAGGGNVSAGWDLTA
NKVIA*					

Nucleotide sequence: 498 bp

						>T6CP000417 NC_005085:c4301608-4301111 [Chromobacterium violaceum ATCC 12472] [TssD]
ATGGCTTTTGATGCATTTCTGAAAATCGATGGCATTCCTGGCGAAAGCGGCGACGACAAGCACAAAGACTGGATCGAAAT
CCAATCGTTCAGCCACAAGCTGGAACAACCGGCCCAGGCTTCCGCCAGCACCGCCGGCGGCGCTACCGCCGAACGCGTGA
ACCACGGCGTGTACGAAATCACCCACTTCCTGGACAAAGCCAGCCCGAAGATCTACGAAGCTTGCTGCACCGGCAAGCAC
ATCAAGGAGATCACCATCGAGCTGTGCCGCGCGGGTGGCGACAAGGTGAAGTACATGGAAATCAAGATGGAACAAGTCCT
GATCTCCAAGGTTGAGCCGCACGGCTCCGCCACCGACAGCGGCTTCCCGGCCGAAAAGGTGAGCTTCAGCTACGGCAAGA
TCAAGTGGACCTACACCCAGCAGAAGCGCGCCGACGGCGCCGGCGGCGGCAATGTCAGCGCCGGTTGGGACCTGACCGCG
AACAAAGTAATCGCCTAA					