Detailed information of component protein


Summary

Component ID T6CP000413
Component protein type TssH
T6SS ID (Type) T6SS00049 insolico (Type i4b)
Strain Chromobacterium violaceum ATCC 12472
Replicon chromosome
Sequence Protein sequence (880 a.a.); Nucleotide sequence (2640 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) CV_RS19645
Coordinate (Strand) 4286490..4289129 (-)
NCBI ID WP_043596793.1
RefSeq NC_005085
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.5e-41 605..778
AAA_lid_9 PF17871.3 1.1e-27 372..465
ClpB_D2-small PF10431.11 2.3e-11 785..857
AAA PF00004.31 8e-11 231..343
Clp_N PF02861.22 6.4e-09 23..74
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 880 a.a.    

>T6CP000413 NC_005085:c4289129-4286490 [Chromobacterium violaceum ATCC 12472] [TssH]
MSVSLKSLIDRLTPTARQAIEQAASRALARTHFEIEIEHVLLAMFDQDDNAALAALRALGADLGRVERELDAALDNFRSG
NTRNPVLSSWLPKWLEKAWLLASAEHGQDSVSTLDLLLALWQDDALRGALQSGAPALARQDAGRLSGAYAALRQHGGEAA
GGEQPSAAADEGEGEAPAAPQGKRGGAALDKYTIDLTAQAKAGKIDPILGRDVEIRQMIDILMRRRQNNPILTGEPGVGK
TAVVEGLARKIVLGEVPPVLSGVTLRTLDLGLLQAGASVKGEFENRLRQVIDEVKASPVPIILFIDEAHTLIGAGGAAGQ
NDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPAPEIAVQMVRGLTDAMAKHHKVEILNEAVAA
AVQLSSRYIAGRQLPDKAISVLDTACARVALSRAGKPGPIEDVTVLIDNIDRETAALEREEGHAERIAELQAQRAKLEQD
LAALHQAWEAQQKLIEEIDELKAAKDEAKPAKGRKLSPLQAKRKELRELQKHQPLAFECVDESVIADVIAGWTGIPLGRM
VSNELEQVQKLAKLLAERVIGQDHALEQIAERVQIAKANLEDPGKPKGVFLLVGPSGVGKTETALALAEALYGGERNLIT
INMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLEDSEGREVDFKN
TIILLTSNAGTDLVMRACEHGVTVEDETRDPTAEDLVEILRPTLQKTFKPAFLGRLTIVPYFPISDDVLRAIVGLKLDKI
RRRIADNHGAQVEFPEELADQMAARCLDVDSGARNADAILTRTLLAQISNDLLSRMASGKPVKKIAVALKGEQVKVKVS*

  Nucleotide sequence: 2640 bp    

>T6CP000413 NC_005085:c4289129-4286490 [Chromobacterium violaceum ATCC 12472] [TssH]
ATGTCCGTATCGCTGAAATCCCTGATAGACCGGTTGACGCCCACCGCGCGCCAGGCCATCGAGCAGGCCGCCAGCCGCGC
GCTGGCCCGCACCCACTTCGAGATCGAGATCGAGCATGTGCTGCTGGCGATGTTCGATCAGGACGACAATGCCGCGCTGG
CGGCGCTGCGCGCGCTGGGCGCGGACCTGGGCCGCGTCGAGCGCGAGCTGGACGCCGCGCTGGACAACTTCCGCAGCGGC
AATACCCGCAATCCGGTGCTGTCGTCGTGGCTGCCCAAGTGGCTGGAAAAGGCCTGGCTGCTGGCCAGCGCCGAGCACGG
CCAGGACAGTGTCTCCACGTTGGACTTGCTGCTGGCGCTGTGGCAGGACGACGCCCTGCGCGGCGCGCTGCAGTCCGGCG
CGCCGGCATTGGCGCGCCAGGATGCCGGCAGGCTGTCCGGCGCCTACGCCGCGCTGCGCCAGCACGGCGGCGAGGCGGCG
GGCGGCGAGCAGCCGTCGGCCGCGGCAGACGAGGGCGAAGGCGAGGCGCCGGCCGCGCCGCAGGGCAAGCGCGGCGGCGC
CGCGCTGGACAAGTACACGATAGACCTGACCGCGCAGGCCAAGGCCGGCAAGATCGACCCCATCCTGGGCCGCGATGTCG
AAATCCGCCAGATGATAGACATCCTGATGCGCCGCCGGCAGAACAATCCCATCCTCACCGGCGAGCCGGGCGTGGGCAAG
ACCGCGGTGGTGGAAGGCTTGGCGCGCAAGATCGTGCTGGGCGAGGTGCCGCCGGTGCTGTCCGGCGTCACGCTGCGCAC
GCTGGACCTGGGCCTGCTGCAGGCCGGCGCCAGCGTCAAGGGCGAGTTCGAGAACCGCCTGCGCCAGGTGATAGACGAGG
TCAAGGCCAGCCCGGTGCCCATCATCCTGTTCATCGACGAGGCGCACACCCTGATCGGCGCCGGCGGCGCGGCCGGCCAG
AACGACGCGGCCAACCTGCTGAAACCGGCGCTGGCGCGCGGCGAGCTGCGCACCATCGCGGCGACGACCTGGGCCGAGTA
CAAGAAGTATTTCGAGAAGGACGCCGCGCTGGCGCGCCGCTTCCAGGTGGTGAAGGTCGAAGAGCCGGCGCCGGAAATCG
CCGTGCAGATGGTGCGCGGCCTGACCGACGCGATGGCCAAGCACCACAAGGTGGAAATCCTCAACGAGGCGGTGGCCGCC
GCAGTGCAGCTGTCCAGCCGCTACATCGCCGGCCGCCAGCTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCTTGCGC
CCGCGTCGCGCTGTCGCGCGCCGGCAAGCCGGGGCCGATCGAGGACGTGACGGTGCTGATAGACAACATCGACCGCGAAA
CCGCCGCGCTGGAGCGCGAGGAAGGCCACGCCGAGCGCATCGCCGAGCTGCAGGCGCAGCGCGCCAAGCTGGAGCAGGAT
CTGGCCGCGCTGCATCAGGCCTGGGAGGCGCAGCAGAAGCTGATCGAAGAGATAGACGAGCTGAAGGCGGCCAAGGACGA
GGCCAAGCCGGCCAAGGGCAGGAAGCTCAGCCCGCTGCAGGCCAAGCGCAAGGAATTGCGCGAGTTGCAGAAGCATCAGC
CGCTGGCGTTCGAATGCGTGGACGAGAGCGTGATCGCCGACGTGATCGCCGGCTGGACCGGCATCCCGCTGGGCCGCATG
GTCAGCAACGAGCTGGAGCAGGTGCAGAAGCTGGCCAAGCTGCTGGCCGAGCGCGTGATCGGCCAGGACCACGCGTTGGA
GCAGATCGCCGAGCGGGTGCAGATCGCCAAGGCCAATCTGGAAGATCCCGGCAAGCCCAAGGGCGTATTCCTGCTGGTGG
GCCCGTCCGGCGTCGGCAAGACCGAGACCGCGCTGGCGCTGGCCGAGGCGCTGTACGGCGGCGAGCGCAATCTGATCACC
ATCAACATGTCCGAATACCAGGAAGCGCACAGCGTGTCCGGCCTGAAGGGCTCGCCCCCGGGTTATGTCGGCTACGGCGA
GGGCGGCGTGCTGACCGAGGCGGTGCGCCGCAAGCCGTACTCCGTCGTGCTGCTGGATGAAGTGGAGAAGGCGCACCCGG
ACGTGCTGGAGCTGTTCTTTCAGGTATTCGACAAGGGCGTGCTGGAGGATAGCGAAGGCCGCGAGGTGGACTTCAAGAAC
ACCATCATCCTGCTGACGTCCAACGCCGGCACCGATCTGGTGATGCGCGCCTGCGAGCACGGCGTGACGGTGGAGGACGA
GACCCGCGACCCGACCGCGGAAGACCTGGTGGAAATCCTGCGCCCGACGCTGCAGAAGACCTTCAAGCCGGCTTTCCTCG
GCCGCCTGACCATCGTGCCTTACTTCCCGATCAGCGACGACGTGCTGCGCGCCATCGTCGGCCTGAAGCTGGACAAGATC
CGCCGCCGCATCGCCGACAACCACGGCGCCCAGGTCGAGTTCCCGGAAGAACTGGCCGATCAGATGGCCGCGCGCTGCCT
GGACGTGGACAGCGGCGCGCGCAACGCCGACGCCATCCTCACCCGCACGCTGCTGGCGCAGATCTCCAACGACCTGCTGT
CGCGTATGGCCAGCGGCAAACCGGTGAAGAAGATCGCCGTCGCGCTGAAGGGCGAGCAGGTCAAGGTGAAGGTGAGTTAA