Detailed information of regulator


Summary

Regulator ID REG0120 experimental
Regulator type protein
Regulatory pathway (from literatures) QS regulatory pathway
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00049 insolico (Type i4b)
Strain Chromobacterium violaceum ATCC 12472
Replicon chromosome
Sequence Protein sequence (287 a.a.); Nucleotide sequence (861 bp)
Description CV_RS06990(VgrG) promotor is activated by CviR.
Reference
External database links

Locus tag (Gene) CV_RS20220 (CviR)
Coordinates (Strand) 4426186..4427046 (+)
NCBI ID 1169634970
RefSeq NC_005085
Uniprot ID -
KEGG ID -
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
Target Regulation (↓/↑) Target sequence
CV_RS06990 (VgrG) promotor ↓ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
Autoind_bind PF03472.17 1.4e-27 58..202
GerE PF00196.21 6.6e-23 217..271
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-286 MQQACGALSATHRTKNKEDPLMVTSKPINARPLPAGLTASQQWTLLEWIHMAGHIETEGELKAFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSYPSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRNNVGSILSIGGKEPGRNAALVAMLNCLTPHLHQAAVRIANLPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMHLAMTPRELVNG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9698 - -


  Protein sequence of regulator: 287 a.a.    .

>REG0120 NC_005085:4426186-4427046 [Chromobacterium violaceum ATCC 12472]
MQQACGALSATHRTKNKEDPLMVTSKPINARPLPAGLTASQQWTLLEWIHMAGHIETEGELKAFLDNILSQAPSDRIILV
LGRLNNQNQIQRMEKVLNVSYPSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGI
TFSAASDRNNVGSILSIGGKEPGRNAALVAMLNCLTPHLHQAAVRIANLPPASPSNMPLSQREYDIFHWMSRGKTNWEIA
TILNISERTVKFHVANVIRKLNANNRTHAIVLGMHLAMTPRELVNG*

  Nucleotide sequence of regulator: 861 bp    .

>REG0120 NC_005085:4426186-4427046 [Chromobacterium violaceum ATCC 12472]
ATGCAACAAGCATGTGGGGCACTATCTGCGACACACAGAACCAAGAACAAGGAAGACCCGCTCATGGTGACTTCAAAACC
CATCAATGCAAGACCGCTCCCGGCCGGCCTCACCGCGTCGCAGCAATGGACATTGCTGGAGTGGATTCACATGGCCGGGC
ATATCGAAACCGAGGGCGAGCTCAAGGCCTTCCTTGACAACATCCTGAGCCAGGCCCCGTCCGACCGCATCATTCTGGTA
TTGGGACGCCTGAACAACCAGAATCAGATCCAGAGAATGGAGAAGGTTCTGAACGTCAGCTACCCATCCGACTGGCTCAA
CCAGTACTCCCAGGAAAACTTCGCCCAGCACGATCCCATCATGCGCATCCACCTGGGCCAGGGACCGGTCATCTGGGAAG
AGCGCTTCAGCCGCGCCAAAGGCTCGGAGGAAAAGCGCTTCATCGCGGAAGCCTCCAGCAACGGCATGGGCAGCGGCATC
ACGTTCAGCGCGGCCTCCGACCGCAACAACGTCGGCAGCATCCTGTCCATCGGCGGAAAGGAACCCGGACGCAACGCGGC
CTTGGTCGCCATGCTGAACTGCCTGACGCCCCATCTGCATCAGGCAGCGGTCCGGATCGCCAACCTGCCGCCGGCATCGC
CCAGCAATATGCCGCTATCGCAACGCGAATACGACATTTTCCATTGGATGAGCCGCGGCAAGACCAACTGGGAAATCGCC
ACCATCCTCAACATCAGCGAGAGAACGGTGAAGTTTCACGTCGCCAATGTGATCCGCAAGCTCAATGCGAATAATCGTAC
TCATGCCATAGTGCTTGGCATGCACTTGGCGATGACACCCCGCGAGTTAGTGAACGGATAA