Regulators of regulatory pathway: carbon storage regulatory pathway
All displayed regulators are experimentally validated.
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performedNote: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed| Regulator ID | Locus tag (Gene) | Related T6SS | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|---|
| REG0102 |
VP_RS12395 (CsrA) | T6SS00043 ; T6SS00044 |
protein | carbon storage regulatory pathway | Vibrio parahaemolyticus RIMD 2210633 | chromosome (NC_004603) | 2688313..2688510 (-) | 490550575 | Hcp and vgrG expression and secretion (↓) |
| REG0192 |
YPK_3567 (RovC) | T6SS00260 |
protein | carbon storage regulatory pathway | Yersinia pseudotuberculosis YPIII | chromosome (NC_010465) | 3929654..3930397 (+) | 170025782 | YPK_3567 promotor (↓) |
| REG0193 |
YPK_3372 (CsrA) | T6SS00260 |
protein | carbon storage regulatory pathway | Yersinia pseudotuberculosis YPIII | chromosome (NC_010465) | 3698608..3698793 (-) | 169752121 | YPK_3567 (RovC) (↑); YPK_3563 transcript (↑) |
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed| Regulator ID | Locus tag (Gene) | Related T6SS | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|---|
| REG0103 |
CsrB1 | T6SS00043 ; T6SS00044 |
ncRNA | carbon storage regulatory pathway | Vibrio parahaemolyticus RIMD 2210633 | chromosome (NC_004603) | 2438728..2439035 (+) | - | VP_RS12395 (CsrA) (↑) |
| REG0104 |
CsrB2 | T6SS00043 ; T6SS00044 |
ncRNA | carbon storage regulatory pathway | Vibrio parahaemolyticus RIMD 2210633 | chromosome (NC_004603) | 3215766..3216162 (-) | - | VP_RS12395 (CsrA) (↑) |
| REG0105 |
CsrB3 | T6SS00043 ; T6SS00044 |
ncRNA | carbon storage regulatory pathway | Vibrio parahaemolyticus RIMD 2210633 | plasmid (NC_004605) | 171473..171785 (+) | - | VP_RS12395 (CsrA) (↑) |