Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ABFU47_RS16655 Genome accession   NZ_CP155926
Coordinates   3775834..3776247 (-) Length   137 a.a.
NCBI ID   WP_323475832.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain bglFP 6772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3770834..3781247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU47_RS16635 (ABFU47_16570) pilR 3771085..3772479 (+) 1395 WP_043921909.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU47_RS16640 (ABFU47_16575) - 3772677..3773033 (+) 357 WP_211914179.1 hypothetical protein -
  ABFU47_RS16645 (ABFU47_16580) - 3772978..3773769 (+) 792 WP_202796265.1 toxin -
  ABFU47_RS16650 (ABFU47_16585) pilB 3773952..3775661 (-) 1710 WP_323475836.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU47_RS16655 (ABFU47_16590) comP 3775834..3776247 (-) 414 WP_323475832.1 pilin Machinery gene
  ABFU47_RS16660 (ABFU47_16595) comP 3776380..3776802 (-) 423 WP_323475831.1 pilin Machinery gene
  ABFU47_RS16665 (ABFU47_16600) pilC 3777129..3778391 (+) 1263 WP_323475830.1 type II secretion system F family protein Machinery gene
  ABFU47_RS16670 (ABFU47_16605) - 3778398..3779261 (+) 864 WP_323475829.1 A24 family peptidase -
  ABFU47_RS16675 (ABFU47_16610) coaE 3779275..3779898 (+) 624 WP_116670565.1 dephospho-CoA kinase -
  ABFU47_RS16680 (ABFU47_16615) - 3780430..3780831 (+) 402 WP_043921912.1 SymE family type I addiction module toxin -
  ABFU47_RS16685 (ABFU47_16620) - 3780906..3781196 (+) 291 WP_014508712.1 DUF1778 domain-containing protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14398.71 Da        Isoelectric Point: 8.5043

>NTDB_id=999745 ABFU47_RS16655 WP_323475832.1 3775834..3776247(-) (comP) [Xanthomonas campestris pv. raphani strain bglFP 6772]
MRRNFGFTLIELMIVVAIIAITASIALPAYQDYVIRARVAEAVVLLSGAKALVTENINNENLLAGSACNGVSGAAPATAN
VSNFTCSGNGVLTVQTTAKAGAVTITLLPTYVQEEPVRWRCVRTGGAIKHVPPECRN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=999745 ABFU47_RS16655 WP_323475832.1 3775834..3776247(-) (comP) [Xanthomonas campestris pv. raphani strain bglFP 6772]
ATGAGGCGCAATTTCGGATTTACTCTAATAGAGTTGATGATAGTAGTTGCGATCATAGCAATTACTGCATCAATTGCCTT
GCCCGCCTATCAGGACTATGTAATACGCGCTCGTGTAGCTGAGGCTGTCGTTTTGCTCAGTGGCGCAAAAGCGCTGGTAA
CTGAGAACATAAACAATGAGAATTTATTGGCGGGGTCTGCTTGTAATGGTGTCTCCGGTGCTGCTCCAGCTACAGCCAAT
GTAAGTAATTTTACATGTAGTGGTAATGGAGTTTTGACCGTTCAAACTACAGCTAAGGCCGGGGCTGTTACCATTACATT
ATTGCCTACATATGTGCAAGAGGAGCCCGTAAGGTGGAGGTGCGTGCGTACAGGAGGTGCAATAAAACACGTGCCTCCTG
AGTGCAGAAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

47.651

100

0.518
  pilA2 Legionella pneumophila str. Paris

50.365

100

0.504
  pilA2 Legionella pneumophila strain ERS1305867

50.365

100

0.504
  pilA Ralstonia pseudosolanacearum GMI1000

41.212

100

0.496
  pilE Neisseria gonorrhoeae MS11

36.585

100

0.438
  pilE Neisseria gonorrhoeae strain FA1090

35.948

100

0.401
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.681

100

0.38
  pilA/pilA1 Eikenella corrodens VA1

34.694

100

0.372

Multiple sequence alignment