Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU47_RS16635 Genome accession   NZ_CP155926
Coordinates   3771085..3772479 (+) Length   464 a.a.
NCBI ID   WP_043921909.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain bglFP 6772     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3766085..3777479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU47_RS16610 (ABFU47_16545) - 3766143..3766445 (-) 303 WP_323475834.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABFU47_RS16615 (ABFU47_16550) - 3766449..3766859 (-) 411 WP_029217117.1 CopG family ribbon-helix-helix protein -
  ABFU47_RS16620 (ABFU47_16555) sucD 3766963..3767838 (-) 876 WP_047124757.1 succinate--CoA ligase subunit alpha -
  ABFU47_RS16625 (ABFU47_16560) sucC 3767863..3769032 (-) 1170 WP_323475833.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU47_RS16630 (ABFU47_16565) - 3769266..3770876 (+) 1611 WP_014508702.1 PAS domain-containing sensor histidine kinase -
  ABFU47_RS16635 (ABFU47_16570) pilR 3771085..3772479 (+) 1395 WP_043921909.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU47_RS16640 (ABFU47_16575) - 3772677..3773033 (+) 357 WP_211914179.1 hypothetical protein -
  ABFU47_RS16645 (ABFU47_16580) - 3772978..3773769 (+) 792 WP_202796265.1 toxin -
  ABFU47_RS16650 (ABFU47_16585) pilB 3773952..3775661 (-) 1710 WP_323475836.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU47_RS16655 (ABFU47_16590) comP 3775834..3776247 (-) 414 WP_323475832.1 pilin Machinery gene
  ABFU47_RS16660 (ABFU47_16595) comP 3776380..3776802 (-) 423 WP_323475831.1 pilin Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50279.66 Da        Isoelectric Point: 6.3588

>NTDB_id=999743 ABFU47_RS16635 WP_043921909.1 3771085..3772479(+) (pilR) [Xanthomonas campestris pv. raphani strain bglFP 6772]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=999743 ABFU47_RS16635 WP_043921909.1 3771085..3772479(+) (pilR) [Xanthomonas campestris pv. raphani strain bglFP 6772]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAACTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGTGTGGGCAAGGAATTGGTGGCCCGCACCATCCACGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTACCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAAACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAAGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATTCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGC
CGCGATCCAGAAAGCGCTGGAGGAGAATCGTTGGAACAAGACCAGAACTGCCGCGCAACTCGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment