Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ABFU47_RS16660 Genome accession   NZ_CP155926
Coordinates   3776380..3776802 (-) Length   140 a.a.
NCBI ID   WP_323475831.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain bglFP 6772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3771380..3781802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU47_RS16640 (ABFU47_16575) - 3772677..3773033 (+) 357 WP_211914179.1 hypothetical protein -
  ABFU47_RS16645 (ABFU47_16580) - 3772978..3773769 (+) 792 WP_202796265.1 toxin -
  ABFU47_RS16650 (ABFU47_16585) pilB 3773952..3775661 (-) 1710 WP_323475836.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU47_RS16655 (ABFU47_16590) comP 3775834..3776247 (-) 414 WP_323475832.1 pilin Machinery gene
  ABFU47_RS16660 (ABFU47_16595) comP 3776380..3776802 (-) 423 WP_323475831.1 pilin Machinery gene
  ABFU47_RS16665 (ABFU47_16600) pilC 3777129..3778391 (+) 1263 WP_323475830.1 type II secretion system F family protein Machinery gene
  ABFU47_RS16670 (ABFU47_16605) - 3778398..3779261 (+) 864 WP_323475829.1 A24 family peptidase -
  ABFU47_RS16675 (ABFU47_16610) coaE 3779275..3779898 (+) 624 WP_116670565.1 dephospho-CoA kinase -
  ABFU47_RS16680 (ABFU47_16615) - 3780430..3780831 (+) 402 WP_043921912.1 SymE family type I addiction module toxin -
  ABFU47_RS16685 (ABFU47_16620) - 3780906..3781196 (+) 291 WP_014508712.1 DUF1778 domain-containing protein -
  ABFU47_RS16690 (ABFU47_16625) - 3781193..3781684 (+) 492 WP_323475828.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 13878.97 Da        Isoelectric Point: 8.1053

>NTDB_id=999746 ABFU47_RS16660 WP_323475831.1 3776380..3776802(-) (comP) [Xanthomonas campestris pv. raphani strain bglFP 6772]
MNKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRARVSEAAVLASGAKTTVAENIANNGGTIAAGACLGVDTTAPATT
NVASVTCGANSGAIAITTTAKAGAVTLTFTPQPAAGIAGTKWTCVATGGKAAYYPAECRS

Nucleotide


Download         Length: 423 bp        

>NTDB_id=999746 ABFU47_RS16660 WP_323475831.1 3776380..3776802(-) (comP) [Xanthomonas campestris pv. raphani strain bglFP 6772]
ATGAACAAGCAACAAGGTTTTACCCTTATTGAATTGATGATCGTTGTGGCGATCATTGCTATTCTGGCAGCTATCGCTTT
GCCTGCATATCAAGACTATACAATCCGTGCACGTGTCTCTGAGGCTGCCGTGCTTGCTTCGGGTGCTAAAACTACAGTTG
CTGAGAACATCGCAAATAACGGCGGAACAATAGCTGCCGGCGCATGTCTTGGCGTCGATACCACCGCGCCGGCAACCACA
AATGTCGCTAGCGTTACCTGTGGCGCCAATAGCGGAGCGATTGCAATTACCACAACTGCTAAGGCCGGTGCAGTTACCTT
GACCTTTACTCCGCAGCCTGCTGCCGGTATTGCTGGTACTAAGTGGACCTGTGTTGCGACCGGCGGTAAGGCAGCTTACT
ATCCGGCTGAATGCCGTAGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

53.691

100

0.571
  pilA2 Legionella pneumophila str. Paris

56.115

99.286

0.557
  pilA2 Legionella pneumophila strain ERS1305867

55.396

99.286

0.55
  pilA Ralstonia pseudosolanacearum GMI1000

45.238

100

0.543
  pilA/pilA1 Eikenella corrodens VA1

40.789

100

0.443
  pilA Vibrio parahaemolyticus RIMD 2210633

40.441

97.143

0.393
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.486

100

0.386
  pilA Acinetobacter baumannii strain A118

38.806

95.714

0.371

Multiple sequence alignment