Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU47_RS16665 Genome accession   NZ_CP155926
Coordinates   3777129..3778391 (+) Length   420 a.a.
NCBI ID   WP_323475830.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain bglFP 6772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3772129..3783391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU47_RS16640 (ABFU47_16575) - 3772677..3773033 (+) 357 WP_211914179.1 hypothetical protein -
  ABFU47_RS16645 (ABFU47_16580) - 3772978..3773769 (+) 792 WP_202796265.1 toxin -
  ABFU47_RS16650 (ABFU47_16585) pilB 3773952..3775661 (-) 1710 WP_323475836.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU47_RS16655 (ABFU47_16590) comP 3775834..3776247 (-) 414 WP_323475832.1 pilin Machinery gene
  ABFU47_RS16660 (ABFU47_16595) comP 3776380..3776802 (-) 423 WP_323475831.1 pilin Machinery gene
  ABFU47_RS16665 (ABFU47_16600) pilC 3777129..3778391 (+) 1263 WP_323475830.1 type II secretion system F family protein Machinery gene
  ABFU47_RS16670 (ABFU47_16605) - 3778398..3779261 (+) 864 WP_323475829.1 A24 family peptidase -
  ABFU47_RS16675 (ABFU47_16610) coaE 3779275..3779898 (+) 624 WP_116670565.1 dephospho-CoA kinase -
  ABFU47_RS16680 (ABFU47_16615) - 3780430..3780831 (+) 402 WP_043921912.1 SymE family type I addiction module toxin -
  ABFU47_RS16685 (ABFU47_16620) - 3780906..3781196 (+) 291 WP_014508712.1 DUF1778 domain-containing protein -
  ABFU47_RS16690 (ABFU47_16625) - 3781193..3781684 (+) 492 WP_323475828.1 GNAT family N-acetyltransferase -
  ABFU47_RS16695 (ABFU47_16630) - 3781827..3783161 (-) 1335 WP_012437598.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45894.20 Da        Isoelectric Point: 10.2171

>NTDB_id=999747 ABFU47_RS16665 WP_323475830.1 3777129..3778391(+) (pilC) [Xanthomonas campestris pv. raphani strain bglFP 6772]
MSATRSVVKKSQPVDRSTSQLLLFIWEGTDKRGIKMKGEQSARNMNLLRAELRRQGITPSVVKPKPKPLFGAAGKKVTAK
DISFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKQLVSQVRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVTASRFTVSYWW
LMLLIIGGSAAGFIFAYKRSPSMQHGMDRLLLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEGLGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNMAMKQVNIFPHMVIQMTVIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTV
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=999747 ABFU47_RS16665 WP_323475830.1 3777129..3778391(+) (pilC) [Xanthomonas campestris pv. raphani strain bglFP 6772]
ATGTCAGCTACTCGCAGTGTCGTCAAGAAGTCGCAGCCAGTGGACAGAAGTACAAGCCAGCTGCTGCTTTTCATTTGGGA
AGGGACGGACAAACGCGGCATCAAGATGAAAGGCGAACAATCCGCACGCAACATGAATTTGTTGCGCGCAGAACTTCGTC
GGCAGGGGATCACTCCCAGTGTAGTGAAACCTAAACCCAAGCCGCTTTTTGGCGCCGCTGGTAAAAAAGTTACCGCGAAA
GACATATCTTTCTTTAGTCGCCAGATGGCAACAATGATGAAGTCGGGCGTACCTATCGTCAGCTCATTGGAAATAATAGG
CGAGGGGCACAAGAATCCCCGCATGAAACAGTTGGTTTCTCAAGTACGGACCGATATCGAAGGAGGCTCATCACTCCACG
AAGCTATAAGCAAACACCCAGTTCAATTCGACGAACTTTACCGAAACCTTGTTCGTGCAGGCGAGGGAGCTGGTGTTCTT
GAGACAGTGCTTGACACAGTCGCAACCTATAAAGAGAATATTGAAGCGTTAAAAGGGAAGATTAAAAAAGCACTTTTCTA
TCCAGCCATGGTCGTTGCAGTGGCCCTAATCGTCAGCGCAATTTTACTTATTTTCGTTGTACCCCAGTTTGAAGAGGTCT
TCAAAGGTTTCGGGGCAGAATTACCTGCATTCACCCAAATGATCGTGACCGCATCACGCTTTACGGTCAGTTATTGGTGG
CTCATGCTATTAATCATTGGCGGCTCCGCAGCAGGGTTCATCTTTGCTTATAAGCGCTCCCCGAGTATGCAACACGGGAT
GGATCGCCTGCTCTTAAAAGTTCCTGTGATCGGCCAAATCATGCATAATAGCTCGATCGCCCGCTTTGCTCGCACAACTG
CTGTTACCTTTAAAGCTGGCGTGCCTTTGGTCGAGGGGTTAGGCATAGTGGCGGGCGCAACCGGAAATAAAGTTTATGAG
GAGGCCGTGTTACGCATGCGAGATGACGTATCTGTTGGCTACCCTGTGAACATGGCGATGAAACAGGTCAATATCTTCCC
TCATATGGTAATCCAAATGACCGTAATCGGCGAAGAAGCTGGCGCACTTGATACTATGTTATTCAAAGTGGCAGAGTACT
TCGAACAGGAAGTTAATAACGCCGTTGACGCTTTAAGCAGTCTCTTAGAGCCTATGATCATGGTATTCATCGGCACAGTC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.652

94.524

0.507
  pilC Legionella pneumophila strain ERS1305867

51.97

96.667

0.502
  pilC Acinetobacter baylyi ADP1

50.617

96.429

0.488
  pilC Acinetobacter baumannii D1279779

50.882

94.524

0.481
  pilG Neisseria gonorrhoeae MS11

44.638

95.476

0.426
  pilG Neisseria meningitidis 44/76-A

44.14

95.476

0.421
  pilC Vibrio cholerae strain A1552

41.814

94.524

0.395
  pilC Vibrio campbellii strain DS40M4

40.796

95.714

0.39

Multiple sequence alignment