Detailed information NTG0997787

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABDK11_RS03105
• Genome accession: NZ_CP155567
• Coordinates: 728282..729676 (-)
• Length: 464 a.a.
• NCBI ID: WP_346838847.1
• Uniprot ID: -
• Organism: Microbulbifer sp. SAOS-129_SWC
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 723282..734676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDK11_RS03085 (ABDK11_03085)	-	723372..723917 (+)	546	WP_346838843.1	PilX N-terminal domain-containing pilus assembly protein	-
ABDK11_RS03090 (ABDK11_03090)	-	723941..727012 (+)	3072	WP_346838844.1	PilC/PilY family type IV pilus protein	-
ABDK11_RS03095 (ABDK11_03095)	-	727083..727544 (+)	462	WP_346838845.1	type IV pilin protein	-
ABDK11_RS03100 (ABDK11_03100)	-	727551..728114 (-)	564	WP_346838846.1	GspH/FimT family pseudopilin	-
ABDK11_RS03105 (ABDK11_03105)	pilR	728282..729676 (-)	1395	WP_346838847.1	sigma-54 dependent transcriptional regulator	Regulator
ABDK11_RS03110 (ABDK11_03110)	-	729798..731405 (-)	1608	WP_346838848.1	ATP-binding protein	-
ABDK11_RS03115 (ABDK11_03115)	-	731467..733095 (+)	1629	WP_346838849.1	NAD+ synthase	-
ABDK11_RS03120 (ABDK11_03120)	-	733157..734107 (-)	951	WP_346838850.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 51497.64 Da
• Isoelectric Point: 5.5027

>NTDB_id=997787 ABDK11_RS03105 WP_346838847.1 728282..729676(-) (pilR) [Microbulbifer sp. SAOS-129_SWC]
MQPLALVIDDEPDICELLTLTLRRMEVQCHTAADLAHARHLLERNHYDFCLTDMRLPDGDGLQLVEEIQEQRGGDTPVAV
ITAHGNMDTAINALKLGAFDFVSKPVDLERLRALVQLALRLREPHGGPQTDEHTQLLIGNASNMRRLREQIAKVARSNAP
IYISGESGSGKELAARAIHTQGPRADHPFVPINCGAIPAELMESEFFGHRKGSFTGAHRDKPGLLQSAAGGTLFLDEVAD
LPLEMQVKLLRAIQEKSIRPIGASEETPIDVRILSATHKDLAREVAEGRFRSDLYYRINVIEIAVPPLRDRVEDIPLLAE
TIMQRIAGSTAPRLAEDTLAALRSYAFPGNVRQLENILERAFTLSDQRIIRARDLLLDREAAQAIEEQAAPVAAPPPTEI
EPAYTGQFDPGHYTSLDEFLQSIERGAIEQALNETRWNRTAAAQKLGISFRSLRYRLKKLGLED

Nucleotide

• Length: 1395 bp

>NTDB_id=997787 ABDK11_RS03105 WP_346838847.1 728282..729676(-) (pilR) [Microbulbifer sp. SAOS-129_SWC]
ATGCAACCACTGGCACTGGTCATCGACGATGAACCGGATATCTGCGAATTGCTTACCCTGACTCTGCGGCGTATGGAGGT
GCAGTGCCACACCGCCGCCGACCTGGCGCATGCGCGACATTTGCTCGAGCGCAATCACTACGATTTCTGCCTCACCGATA
TGCGTCTGCCCGATGGTGACGGATTGCAACTGGTGGAGGAGATCCAGGAACAGCGCGGCGGCGATACGCCGGTTGCGGTG
ATTACCGCTCACGGCAATATGGATACCGCCATCAATGCGCTGAAACTTGGCGCCTTCGATTTCGTCAGCAAGCCGGTGGA
CCTCGAACGCCTGCGTGCGCTGGTGCAACTGGCGCTGCGCCTGCGCGAACCGCACGGCGGGCCGCAGACGGATGAACATA
CCCAGCTGCTGATTGGCAATGCCAGCAATATGCGCCGGCTGCGCGAGCAGATTGCCAAGGTTGCGCGCAGCAATGCACCG
ATTTATATCAGTGGCGAGTCCGGTTCCGGCAAGGAGCTGGCGGCCCGCGCCATTCACACCCAGGGCCCCCGCGCCGACCA
TCCCTTCGTTCCCATCAATTGCGGTGCCATCCCCGCGGAGCTGATGGAGAGCGAGTTCTTCGGCCATCGCAAAGGCAGTT
TCACCGGCGCCCATCGCGACAAGCCGGGGCTGTTGCAAAGCGCGGCCGGCGGCACCCTGTTCCTGGACGAAGTGGCAGAC
CTGCCACTGGAGATGCAGGTCAAGCTGCTGCGCGCGATACAGGAAAAGAGCATTCGTCCGATCGGTGCCAGTGAGGAAAC
TCCGATCGACGTGCGCATTCTGAGTGCCACCCACAAAGACCTCGCTCGCGAAGTCGCCGAGGGCCGATTCCGCAGCGACC
TCTACTACCGCATCAATGTGATCGAGATCGCCGTGCCGCCACTGCGCGACCGAGTCGAGGATATTCCGCTACTGGCAGAG
ACCATAATGCAGCGTATCGCCGGCAGCACCGCGCCACGTCTCGCGGAAGATACCCTCGCCGCGCTGCGCAGCTATGCGTT
TCCCGGCAATGTGCGCCAACTGGAAAATATTCTCGAGCGTGCCTTTACCCTGAGCGACCAGCGGATCATTCGCGCACGCG
ATCTACTGCTCGACCGCGAAGCCGCCCAGGCGATTGAAGAACAAGCGGCGCCGGTAGCAGCTCCGCCACCCACCGAAATC
GAACCCGCGTATACGGGGCAGTTCGATCCGGGCCACTACACATCACTGGACGAATTCCTGCAGTCGATCGAACGCGGCGC
CATTGAACAGGCGCTGAACGAAACTCGCTGGAACAGGACCGCTGCGGCGCAGAAGCTCGGCATCAGCTTTCGCTCGCTGC
GCTACCGGCTGAAGAAACTGGGGCTGGAAGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (420-460)

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.039	99.569	0.608
pilR	Acinetobacter baumannii strain A118	49.049	100	0.5