Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ELZ51_RS10645 Genome accession   NZ_LR134094
Coordinates   2116991..2117584 (-) Length   197 a.a.
NCBI ID   WP_003053113.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2111991..2122584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS10615 (NCTC4669_02238) - 2112399..2112668 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  ELZ51_RS10620 (NCTC4669_02239) spx 2112780..2113178 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  ELZ51_RS10625 (NCTC4669_02240) recA 2113477..2114613 (-) 1137 WP_115245519.1 recombinase RecA Machinery gene
  ELZ51_RS10630 (NCTC4669_02241) cinA 2114671..2115942 (-) 1272 WP_126427494.1 competence/damage-inducible protein A Machinery gene
  ELZ51_RS10635 (NCTC4669_02242) - 2116066..2116406 (-) 341 Protein_2051 VOC family protein -
  ELZ51_RS10640 (NCTC4669_02243) - 2116409..2116981 (-) 573 WP_126427496.1 DNA-3-methyladenine glycosylase I -
  ELZ51_RS10645 (NCTC4669_02244) ruvA 2116991..2117584 (-) 594 WP_003053113.1 Holliday junction branch migration protein RuvA Machinery gene
  ELZ51_RS10650 (NCTC4669_02245) - 2117586..2118806 (-) 1221 WP_003053115.1 MDR family MFS transporter -
  ELZ51_RS10655 (NCTC4669_02246) hexB 2118817..2120799 (-) 1983 WP_126427650.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21742.94 Da        Isoelectric Point: 5.0568

>NTDB_id=997788 ELZ51_RS10645 WP_003053113.1 2116991..2117584(-) (ruvA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAQPSTSSNNDELDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=997788 ELZ51_RS10645 WP_003053113.1 2116991..2117584(-) (ruvA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACCAATGGACTGGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGACGCTCACTTGTTGTTTGGGTTCCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGTCTTGTTAACGCCATTGATACCAGTGACATCAA
ATACCTGACTAAATTTCCTAAAATCGGAAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCTGGAAAATTTGTGGAGG
TTCCACAAGAGACTAGTAAAGCACAACCATCTACCTCCTCAAACAATGACGAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAACTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68.528

100

0.685
  ruvA Streptococcus pneumoniae R6

68.528

100

0.685
  ruvA Streptococcus pneumoniae D39

68.528

100

0.685
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406