Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABDK11_RS02955 Genome accession   NZ_CP155567
Coordinates   697269..697883 (+) Length   204 a.a.
NCBI ID   WP_346838819.1    Uniprot ID   -
Organism   Microbulbifer sp. SAOS-129_SWC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 692269..702883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDK11_RS02945 (ABDK11_02945) - 694369..695802 (+) 1434 WP_346838817.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  ABDK11_RS02950 (ABDK11_02950) - 695881..697056 (+) 1176 WP_346838818.1 MFS transporter -
  ABDK11_RS02955 (ABDK11_02955) ssb 697269..697883 (+) 615 WP_346838819.1 single-stranded DNA-binding protein Machinery gene
  ABDK11_RS02960 (ABDK11_02960) - 697899..698744 (+) 846 WP_346838820.1 sugar nucleotide-binding protein -
  ABDK11_RS02965 (ABDK11_02965) - 699059..700423 (-) 1365 WP_346838821.1 phosphomannomutase -
  ABDK11_RS02970 (ABDK11_02970) galU 700425..701273 (-) 849 WP_346838822.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ABDK11_RS02975 (ABDK11_02975) fabA 701576..702100 (+) 525 WP_346838823.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22017.96 Da        Isoelectric Point: 4.9746

>NTDB_id=997786 ABDK11_RS02955 WP_346838819.1 697269..697883(+) (ssb) [Microbulbifer sp. SAOS-129_SWC]
MARGINKVILIGNLGADPETRYMPSGGAVTNVNLATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYIE
GSLRTRKWQDKNSGQDRYTTEIVASEMQMLDGRGDQGGYGQGMGGQGGYDQQQGGGYGQQQGGGFGGQQGGPDSFNQGRS
APSPMAPSNQPQQPAQQPAQQPAQQPNQAPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=997786 ABDK11_RS02955 WP_346838819.1 697269..697883(+) (ssb) [Microbulbifer sp. SAOS-129_SWC]
ATGGCCCGGGGTATCAACAAAGTAATTCTGATCGGCAATCTGGGCGCAGACCCGGAAACCCGCTATATGCCCAGCGGCGG
GGCGGTGACCAACGTCAACCTGGCGACCTCCGAGAGCTGGAAGGACAAGCAGACTGGCCAGCAGCAGGAGCGTACCGAAT
GGCACCGTGTGGTGTTCTTCAATCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAAGGCTCCAAAGTCTACATCGAG
GGCTCCCTGCGCACGCGTAAATGGCAGGACAAGAACTCCGGCCAGGACCGCTACACCACCGAGATCGTCGCCAGCGAGAT
GCAGATGCTCGACGGCCGCGGTGACCAGGGCGGTTATGGTCAAGGAATGGGCGGCCAGGGCGGCTACGATCAGCAGCAGG
GCGGTGGTTACGGCCAGCAGCAGGGCGGCGGCTTTGGCGGCCAGCAGGGCGGTCCGGACAGCTTCAATCAGGGCCGTTCC
GCACCCTCGCCGATGGCGCCTTCCAACCAGCCCCAGCAGCCGGCGCAGCAGCCAGCACAGCAGCCAGCACAGCAGCCTAA
CCAGGCGCCGGCCGGCGGCTTCGACAATAGCTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.549
  ssb Glaesserella parasuis strain SC1401

53.202

99.51

0.529
  ssb Neisseria gonorrhoeae MS11

46

98.039

0.451
  ssb Neisseria meningitidis MC58

43.5

98.039

0.426

Multiple sequence alignment