Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AAG562_RS19705 | Genome accession | NZ_CP152340 |
| Coordinates | 4256095..4256595 (+) | Length | 166 a.a. |
| NCBI ID | WP_003281200.1 | Uniprot ID | - |
| Organism | Stutzerimonas stutzeri strain NCIMB_885 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4251095..4261595
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAG562_RS19685 (AAG562_19685) | coaE | 4251225..4251833 (-) | 609 | WP_003281195.1 | dephospho-CoA kinase | - |
| AAG562_RS19690 (AAG562_19690) | pilD | 4251991..4252860 (-) | 870 | WP_003281196.1 | A24 family peptidase | Machinery gene |
| AAG562_RS19695 (AAG562_19695) | pilC | 4252863..4254080 (-) | 1218 | WP_003281197.1 | type II secretion system F family protein | Machinery gene |
| AAG562_RS19700 (AAG562_19700) | pilB | 4254082..4255785 (-) | 1704 | WP_003281199.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AAG562_RS19705 (AAG562_19705) | pilA | 4256095..4256595 (+) | 501 | WP_003281200.1 | pilin | Machinery gene |
| AAG562_RS19710 (AAG562_19710) | - | 4257098..4257652 (+) | 555 | WP_003281202.1 | transposase | - |
| AAG562_RS19715 (AAG562_19715) | cysN | 4257895..4259793 (-) | 1899 | WP_003281204.1 | sulfate adenylyltransferase subunit CysN | - |
| AAG562_RS19720 (AAG562_19720) | cysD | 4259805..4260722 (-) | 918 | WP_003281205.1 | sulfate adenylyltransferase subunit CysD | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 16581.81 Da Isoelectric Point: 4.3718
>NTDB_id=988455 AAG562_RS19705 WP_003281200.1 4256095..4256595(+) (pilA) [Stutzerimonas stutzeri strain NCIMB_885]
MKAQMQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKVTEGLSLAGSAKAAVSENAANGAPFNSGWTAPGATSNVES
IAIDETTGAITITYDAAIDGGATLILTPVDGEAATGTALAGTDTASTIPSAGSITWLCASTGSTNANAALQKGSIKDKYV
PAVCRT
MKAQMQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKVTEGLSLAGSAKAAVSENAANGAPFNSGWTAPGATSNVES
IAIDETTGAITITYDAAIDGGATLILTPVDGEAATGTALAGTDTASTIPSAGSITWLCASTGSTNANAALQKGSIKDKYV
PAVCRT
Nucleotide
Download Length: 501 bp
>NTDB_id=988455 AAG562_RS19705 WP_003281200.1 4256095..4256595(+) (pilA) [Stutzerimonas stutzeri strain NCIMB_885]
ATGAAAGCTCAGATGCAGAAGGGTTTTACCCTTATTGAATTGATGATCGTTGTGGCGATTATCGGGATTTTGGCTGCGGT
GGCGTTGCCGGCGTATCAGGATTACACCGTACGGGCAAAGGTGACTGAAGGTCTGTCCCTCGCTGGCTCTGCTAAAGCGG
CCGTTTCTGAAAATGCGGCAAACGGTGCTCCGTTCAACTCCGGATGGACCGCCCCCGGGGCCACTAGCAACGTTGAAAGC
ATTGCCATTGACGAGACCACGGGCGCTATCACAATTACTTATGATGCAGCAATTGACGGCGGCGCGACCTTAATCCTTAC
TCCAGTTGATGGTGAGGCTGCGACTGGCACCGCATTGGCTGGCACCGACACAGCATCCACTATCCCTTCGGCAGGCTCGA
TCACTTGGCTATGCGCGTCGACCGGCAGCACCAACGCTAATGCGGCTCTGCAAAAAGGCAGCATCAAAGACAAATACGTT
CCGGCGGTATGCCGCACGTAA
ATGAAAGCTCAGATGCAGAAGGGTTTTACCCTTATTGAATTGATGATCGTTGTGGCGATTATCGGGATTTTGGCTGCGGT
GGCGTTGCCGGCGTATCAGGATTACACCGTACGGGCAAAGGTGACTGAAGGTCTGTCCCTCGCTGGCTCTGCTAAAGCGG
CCGTTTCTGAAAATGCGGCAAACGGTGCTCCGTTCAACTCCGGATGGACCGCCCCCGGGGCCACTAGCAACGTTGAAAGC
ATTGCCATTGACGAGACCACGGGCGCTATCACAATTACTTATGATGCAGCAATTGACGGCGGCGCGACCTTAATCCTTAC
TCCAGTTGATGGTGAGGCTGCGACTGGCACCGCATTGGCTGGCACCGACACAGCATCCACTATCCCTTCGGCAGGCTCGA
TCACTTGGCTATGCGCGTCGACCGGCAGCACCAACGCTAATGCGGCTCTGCAAAAAGGCAGCATCAAAGACAAATACGTT
CCGGCGGTATGCCGCACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
50.581 |
100 |
0.524 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.121 |
99.398 |
0.518 |
| pilA2 | Legionella pneumophila str. Paris |
51.515 |
99.398 |
0.512 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
38.776 |
100 |
0.458 |
| comP | Acinetobacter baylyi ADP1 |
40 |
100 |
0.422 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.433 |
100 |
0.422 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40 |
99.398 |
0.398 |
| pilE | Neisseria gonorrhoeae MS11 |
37.572 |
100 |
0.392 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
36.31 |
100 |
0.367 |