Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAG562_RS19695 Genome accession   NZ_CP152340
Coordinates   4252863..4254080 (-) Length   405 a.a.
NCBI ID   WP_003281197.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain NCIMB_885     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4247863..4259080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG562_RS19660 (AAG562_19660) rpsI 4247946..4248338 (-) 393 WP_003281187.1 30S ribosomal protein S9 -
  AAG562_RS19665 (AAG562_19665) rplM 4248353..4248781 (-) 429 WP_003281188.1 50S ribosomal protein L13 -
  AAG562_RS19670 (AAG562_19670) - 4249219..4250256 (+) 1038 WP_003281190.1 NADP(H)-dependent aldo-keto reductase -
  AAG562_RS19675 (AAG562_19675) - 4250324..4251003 (+) 680 Protein_3868 energy-coupling factor ABC transporter permease -
  AAG562_RS19680 (AAG562_19680) yacG 4251034..4251228 (-) 195 WP_003281194.1 DNA gyrase inhibitor YacG -
  AAG562_RS19685 (AAG562_19685) coaE 4251225..4251833 (-) 609 WP_003281195.1 dephospho-CoA kinase -
  AAG562_RS19690 (AAG562_19690) pilD 4251991..4252860 (-) 870 WP_003281196.1 A24 family peptidase Machinery gene
  AAG562_RS19695 (AAG562_19695) pilC 4252863..4254080 (-) 1218 WP_003281197.1 type II secretion system F family protein Machinery gene
  AAG562_RS19700 (AAG562_19700) pilB 4254082..4255785 (-) 1704 WP_003281199.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAG562_RS19705 (AAG562_19705) pilA 4256095..4256595 (+) 501 WP_003281200.1 pilin Machinery gene
  AAG562_RS19710 (AAG562_19710) - 4257098..4257652 (+) 555 WP_003281202.1 transposase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43923.59 Da        Isoelectric Point: 9.9374

>NTDB_id=988453 AAG562_RS19695 WP_003281197.1 4252863..4254080(-) (pilC) [Stutzerimonas stutzeri strain NCIMB_885]
MAQKAIKTSVFTWEGTNRQGAKIKGELSGVSPALVKAQLRKQGVNPQKVRKKSVSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEALQAWWHLVLVVMFGAAYAFK
TAHGKSERFRNGFDRFLLKVPVVGDILYKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATMKVKSDVSSGM
QLNFSMRTTGAFPSMAVQMTAIGEESGALDEMLGKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=988453 AAG562_RS19695 WP_003281197.1 4252863..4254080(-) (pilC) [Stutzerimonas stutzeri strain NCIMB_885]
ATGGCGCAGAAAGCGATAAAGACCAGTGTGTTCACCTGGGAAGGGACGAACAGGCAGGGCGCAAAGATCAAAGGCGAGCT
GAGCGGCGTCAGCCCTGCGCTGGTAAAGGCGCAGCTGCGCAAGCAGGGTGTTAACCCGCAGAAGGTGCGTAAGAAGTCGG
TTTCATTGTTCAGTGCTGGCAAGAAGATCAAGCCGATGGACATCGCCTTGTTCACTCGCCAAATGGCAACGATGATGAAG
GCCGGTGTGCCGCTTCTTCAGTCCTTTGACATTATCGGCGAAGGCTTTGACAACCCGAATATGCGAAAGCTGGTGGATGA
CCTGAAGCAGGAGGTCGCGGCGGGTAATAGTTTCGCAACCGCACTGCGTAAGAAGCCGCAGTACTTCGACGATCTTTATT
GCAACCTAGTGGATTCTGGTGAGCAATCTGGCTCGCTGGAAACGCTGCTTGATCGGGTGGCGACTTACAAGGAAAAGACC
GAGGCTCTGAAAGCGAAGATCAAGAAAGCGATGAACTACCCTATCGCGGTGGTGCTGGTTGCGATCATTGTTTCCGCGAT
CCTGTTGATCAAGGTGGTTCCGCAGTTTCAGGATGTCTTTGCAAATTTCGGTGCGGAACTTCCGGCGTTTACTTTGATGG
TGATTGGGTTGTCCGAAGCTCTGCAGGCGTGGTGGCATCTGGTGCTGGTTGTTATGTTTGGGGCGGCTTATGCCTTCAAA
ACAGCCCACGGCAAATCGGAACGTTTCCGTAACGGGTTTGACCGTTTTTTGCTCAAGGTTCCTGTGGTCGGCGACATTCT
CTATAAATCTGCTGTGGCGCGTTTCGCTCGCACACTGTCAACTACCTTTGCTGCAGGCGTGCCATTGGTAGATGCATTGG
ATTCGGTCGCTGGCGCAACCGGCAATGTCGTGTTCCGCAATGCAACGATGAAGGTGAAGAGCGACGTTTCGAGCGGTATG
CAGCTCAACTTTTCCATGCGTACGACTGGCGCCTTTCCGAGTATGGCTGTCCAGATGACTGCCATTGGCGAAGAGTCCGG
CGCGCTTGATGAGATGTTGGGGAAGGTCGCGACGTTTTACGAGGACGAAGTTGACAATATGGTTGATGGACTGACTAGTC
TCATGGAACCAATGATTATGGCTGTGCTGGGAGTTTTGGTTGGCGGCCTAATCATCGCTATGTATCTTCCGATCTTCCAG
CTTGGCTCTGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

92.593

100

0.926
  pilC Acinetobacter baylyi ADP1

59.606

100

0.598
  pilC Acinetobacter baumannii D1279779

59.259

100

0.593
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilG Neisseria meningitidis 44/76-A

43.781

99.259

0.435
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402

Multiple sequence alignment