Detailed information NTG0988452

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAG562_RS19690
• Genome accession: NZ_CP152340
• Coordinates: 4251991..4252860 (-)
• Length: 289 a.a.
• NCBI ID: WP_003281196.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain NCIMB_885
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4246991..4257860

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG562_RS19655 (AAG562_19655)	petA	4247098..4247691 (-)	594	WP_003281184.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
AAG562_RS19660 (AAG562_19660)	rpsI	4247946..4248338 (-)	393	WP_003281187.1	30S ribosomal protein S9	-
AAG562_RS19665 (AAG562_19665)	rplM	4248353..4248781 (-)	429	WP_003281188.1	50S ribosomal protein L13	-
AAG562_RS19670 (AAG562_19670)	-	4249219..4250256 (+)	1038	WP_003281190.1	NADP(H)-dependent aldo-keto reductase	-
AAG562_RS19675 (AAG562_19675)	-	4250324..4251003 (+)	680	Protein_3868	energy-coupling factor ABC transporter permease	-
AAG562_RS19680 (AAG562_19680)	yacG	4251034..4251228 (-)	195	WP_003281194.1	DNA gyrase inhibitor YacG	-
AAG562_RS19685 (AAG562_19685)	coaE	4251225..4251833 (-)	609	WP_003281195.1	dephospho-CoA kinase	-
AAG562_RS19690 (AAG562_19690)	pilD	4251991..4252860 (-)	870	WP_003281196.1	A24 family peptidase	Machinery gene
AAG562_RS19695 (AAG562_19695)	pilC	4252863..4254080 (-)	1218	WP_003281197.1	type II secretion system F family protein	Machinery gene
AAG562_RS19700 (AAG562_19700)	pilB	4254082..4255785 (-)	1704	WP_003281199.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAG562_RS19705 (AAG562_19705)	pilA	4256095..4256595 (+)	501	WP_003281200.1	pilin	Machinery gene
AAG562_RS19710 (AAG562_19710)	-	4257098..4257652 (+)	555	WP_003281202.1	transposase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32391.56 Da
• Isoelectric Point: 6.6180

>NTDB_id=988452 AAG562_RS19690 WP_003281196.1 4251991..4252860(-) (pilD) [Stutzerimonas stutzeri strain NCIMB_885]
MTLIDYLASHVLAFVLCAALLGLLVGSFLNVVIYRLPIMMQRDWRMQAREYLEYPPEPAGERFNLLLPNSRCPHCDHKIR
SWENIPLVSWLALRGKCSACQAPISCRYPLVELACGLLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLILNDFALFVPLESALWGAVAGYLSLWLVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLRMQKAESNTPIPFGPYLAIAGWIALLWGDWITESYLQFVRF

Nucleotide

• Length: 870 bp

>NTDB_id=988452 AAG562_RS19690 WP_003281196.1 4251991..4252860(-) (pilD) [Stutzerimonas stutzeri strain NCIMB_885]
ATGACTCTGATCGATTATCTGGCCAGCCACGTGCTGGCCTTTGTTTTGTGTGCTGCTTTGCTTGGTTTGTTGGTTGGCAG
CTTTCTCAATGTCGTGATTTACCGCCTGCCGATCATGATGCAGCGCGATTGGCGTATGCAGGCGCGTGAGTATCTGGAGT
ACCCACCGGAGCCGGCCGGCGAGCGCTTCAACCTGCTGTTGCCGAACTCACGCTGTCCTCACTGTGATCATAAGATTCGC
TCGTGGGAGAACATTCCTTTAGTCAGCTGGTTGGCCCTGCGCGGCAAGTGCTCGGCTTGCCAGGCTCCGATCAGCTGTCG
TTATCCGTTGGTGGAGCTGGCTTGCGGGCTGTTGTCCGGGTATGTCGCCTGGCATTTCGGTTTCTCCTGGCAGGCCGGGG
CGATGTTGTTGCTGACGTGGGGCTTGTTGGCGATGAGCATGATTGATGTCGATCATCAGTTACTGCCTGACGCGCTGGTG
CTGCCGCTGTTATGGCTGGGACTCATTCTCAATGACTTCGCTTTGTTCGTGCCCTTGGAGAGTGCGCTTTGGGGCGCGGT
AGCGGGGTACCTGAGTCTTTGGTTGGTTTACTGGTTGTTCAAGTTGGTTACCGGTAAAGAGGGTATGGGCTACGGTGACT
TCAAGCTGCTTGCGATGCTTGGGGCGTGGGGAGGGTGGCAGGTGCTGCCGTTGACCATCCTGTTGTCATCGGTGGTTGGC
GCTGTGCTCGGTAGCATCCTCTTGCGGATGCAGAAGGCAGAAAGCAATACGCCAATTCCTTTCGGCCCTTACCTTGCTAT
CGCAGGATGGATTGCATTGCTGTGGGGTGACTGGATTACCGAAAGCTACCTGCAGTTCGTACGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.029	94.81	0.55
pilD	Vibrio campbellii strain DS40M4	56.044	94.464	0.529
pilD	Acinetobacter baumannii D1279779	52.113	98.27	0.512
pilD	Acinetobacter nosocomialis M2	52.113	98.27	0.512
pilD	Neisseria gonorrhoeae MS11	53.64	90.311	0.484