Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   R8635_RS10435 Genome accession   NZ_AP026924
Coordinates   2000972..2001913 (-) Length   313 a.a.
NCBI ID   WP_000249571.1    Uniprot ID   A0A0B7M3Q7
Organism   Streptococcus pneumoniae strain PZ900700063     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1995972..2006913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8635_RS10395 (PC0062_20290) comYH 1996458..1997411 (-) 954 WP_050233486.1 class I SAM-dependent methyltransferase Machinery gene
  R8635_RS10400 - 1997472..1998066 (-) 595 Protein_2030 class I SAM-dependent methyltransferase -
  R8635_RS10405 (PC0062_20320) comGG/cglG 1998203..1998616 (-) 414 WP_000265620.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8635_RS10410 comGF/cglF 1998594..1999055 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8635_RS10415 (PC0062_20340) comGE/cglE 1999018..1999320 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8635_RS10420 (PC0062_20350) comGD/cglD 1999283..1999687 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8635_RS10425 (PC0062_20360) comGC/cglC 1999680..2000006 (-) 327 WP_000738630.1 comG operon protein ComGC Machinery gene
  R8635_RS10430 (PC0062_20370) comGB/cglB 2000008..2001024 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8635_RS10435 (PC0062_20380) comGA/cglA/cilD 2000972..2001913 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  R8635_RS10440 (PC0062_20390) - 2001989..2002354 (-) 366 WP_000286415.1 DUF1033 family protein -
  R8635_RS10445 (PC0062_20400) - 2002505..2003563 (-) 1059 WP_000649470.1 zinc-dependent alcohol dehydrogenase family protein -
  R8635_RS10450 - 2003818..2005094 (+) 1277 Protein_2040 ISL3 family transposase -
  R8635_RS10455 (PC0062_20440) nagA 2005167..2006318 (-) 1152 WP_268217935.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35591.51 Da        Isoelectric Point: 6.0083

>NTDB_id=98306 R8635_RS10435 WP_000249571.1 2000972..2001913(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain PZ900700063]
MVQEIAQEIIRSARKKGTQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYA
YDQKMASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQ
VMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIRGVY
ERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFANRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=98306 R8635_RS10435 WP_000249571.1 2000972..2001913(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain PZ900700063]
ATGGTTCAAGAAATTGCACAAGAAATCATTCGTTCAGCTCGGAAAAAAGGGACGCAGGATATTTATTTTGTCCCTAAGTT
AGACGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGCTGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCG
TTATCAGTCACTTTAAGTTTGTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
TATGACCAGAAGATGGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGACATGAGAGTTTGGTTATCCGTTTGTT
GCACGATGAGGAGCAGGACTTGCATTTTTGGTTTCAGGATATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGACTCT
ATCTTTTTGCTGGCCCGGTTGGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTGAACGAAGCAATCGGCCTAAC
CTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCAGATCTCTTGATTATCGGAGAAATTCGTGACAGCGAGACGG
CGCGTGCAGTGGTCAGAGCTAGTTTGACAGGTGCGACAGTCTTTTCAACCATTCACGCCAAGAGTATCCGAGGTGTTTAT
GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTCTGCAAGGAGTCTGCTACCAGAGATTAATCGG
GGGAGGAGGAATCGTTGACTTTGCAAACAGAGATTATCAAGAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGC
TTCTTAAAGATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7M3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae D39

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae R6

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

99.042

100

0.99
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

96.805

100

0.968
  comYA Streptococcus gordonii str. Challis substr. CH1

77.742

99.042

0.77
  comYA Streptococcus mutans UA159

65.916

99.361

0.655
  comYA Streptococcus mutans UA140

65.916

99.361

0.655
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.581

99.042

0.62
  comGA Lactococcus lactis subsp. cremoris KW2

54.808

99.681

0.546
  comGA Latilactobacillus sakei subsp. sakei 23K

42.642

84.665

0.361

Multiple sequence alignment