Detailed information NTG0098303

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: R8635_RS10420
• Genome accession: NZ_AP026924
• Coordinates: 1999283..1999687 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588013.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700063
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1994283..2004687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8635_RS10380 (PC0062_20270)	rnpA	1994697..1995068 (-)	372	WP_000739246.1	ribonuclease P protein component	-
R8635_RS10385	-	1995085..1995216 (-)	132	WP_000768904.1	hypothetical protein	-
R8635_RS10390 (PC0062_20280)	-	1995217..1996407 (-)	1191	WP_050245357.1	acetate kinase	-
R8635_RS10395 (PC0062_20290)	comYH	1996458..1997411 (-)	954	WP_050233486.1	class I SAM-dependent methyltransferase	Machinery gene
R8635_RS10400	-	1997472..1998066 (-)	595	Protein_2030	class I SAM-dependent methyltransferase	-
R8635_RS10405 (PC0062_20320)	comGG/cglG	1998203..1998616 (-)	414	WP_000265620.1	competence type IV pilus minor pilin ComGG	Machinery gene
R8635_RS10410	comGF/cglF	1998594..1999055 (-)	462	WP_000250540.1	competence type IV pilus minor pilin ComGF	Machinery gene
R8635_RS10415 (PC0062_20340)	comGE/cglE	1999018..1999320 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
R8635_RS10420 (PC0062_20350)	comGD/cglD	1999283..1999687 (-)	405	WP_000588013.1	competence type IV pilus minor pilin ComGD	Machinery gene
R8635_RS10425 (PC0062_20360)	comGC/cglC	1999680..2000006 (-)	327	WP_000738630.1	comG operon protein ComGC	Machinery gene
R8635_RS10430 (PC0062_20370)	comGB/cglB	2000008..2001024 (-)	1017	WP_075218762.1	competence type IV pilus assembly protein ComGB	Machinery gene
R8635_RS10435 (PC0062_20380)	comGA/cglA/cilD	2000972..2001913 (-)	942	WP_000249571.1	competence type IV pilus ATPase ComGA	Machinery gene
R8635_RS10440 (PC0062_20390)	-	2001989..2002354 (-)	366	WP_000286415.1	DUF1033 family protein	-
R8635_RS10445 (PC0062_20400)	-	2002505..2003563 (-)	1059	WP_000649470.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14665.85 Da
• Isoelectric Point: 10.2164

>NTDB_id=98303 R8635_RS10420 WP_000588013.1 1999283..1999687(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700063]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTNLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=98303 R8635_RS10420 WP_000588013.1 1999283..1999687(-) (comGD/cglD) [Streptococcus pneumoniae strain PZ900700063]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCGGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAATCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae Rx1	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae D39	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae R6	97.015	100	0.97
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	58.268	94.776	0.552
comYD	Streptococcus mutans UA140	49.219	95.522	0.47
comYD	Streptococcus mutans UA159	49.219	95.522	0.47