Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | VUK15_RS09845 | Genome accession | NZ_CP150462 |
| Coordinates | 868161..868421 (+) | Length | 86 a.a. |
| NCBI ID | WP_370466065.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. piscicida strain NH-LM2 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 863161..873421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VUK15_RS09835 (VUK15_09835) | hupB | 865450..865722 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| VUK15_RS09840 (VUK15_09840) | ppiD | 866073..867971 (+) | 1899 | WP_112162657.1 | peptidylprolyl isomerase | - |
| VUK15_RS09845 (VUK15_09845) | comEA | 868161..868421 (+) | 261 | WP_370466065.1 | ComEA family DNA-binding protein | Machinery gene |
| VUK15_RS09850 (VUK15_09850) | - | 868506..868844 (-) | 339 | WP_068947005.1 | DUF1971 domain-containing protein | - |
| VUK15_RS09855 (VUK15_09855) | rrtA | 868931..869488 (-) | 558 | WP_106339069.1 | rhombosortase | - |
| VUK15_RS09860 (VUK15_09860) | - | 869498..870118 (+) | 621 | WP_112162659.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| VUK15_RS09865 (VUK15_09865) | - | 870253..871581 (-) | 1329 | WP_340642267.1 | anti-phage deoxyguanosine triphosphatase | - |
| VUK15_RS09870 (VUK15_09870) | yfbR | 871581..872165 (-) | 585 | WP_068947009.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9485.96 Da Isoelectric Point: 5.1351
>NTDB_id=970379 VUK15_RS09845 WP_370466065.1 868161..868421(+) (comEA) [Photobacterium damselae subsp. piscicida strain NH-LM2]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=970379 VUK15_RS09845 WP_370466065.1 868161..868421(+) (comEA) [Photobacterium damselae subsp. piscicida strain NH-LM2]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATTCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATTCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |