Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   NYE32_RS00715 Genome accession   NZ_CP150201
Coordinates   124162..124659 (+) Length   165 a.a.
NCBI ID   WP_175057370.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 119162..129659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS00715 (NYE32_00715) comX/sigX 124162..124659 (+) 498 WP_175057370.1 sigma-70 family RNA polymerase sigma factor Regulator
  NYE32_RS00720 (NYE32_00720) - 124772..125614 (-) 843 WP_175057371.1 mechanosensitive ion channel family protein -
  NYE32_RS00725 (NYE32_00725) tig 125757..127040 (+) 1284 WP_339157042.1 trigger factor -
  NYE32_RS00730 (NYE32_00730) rpoE 127198..127773 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  NYE32_RS00735 (NYE32_00735) - 128026..129630 (+) 1605 WP_002889723.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19979.80 Da        Isoelectric Point: 5.1688

>NTDB_id=966141 NYE32_RS00715 WP_175057370.1 124162..124659(+) (comX/sigX) [Streptococcus sp. FSL R7-0248]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLKKFPELASDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=966141 NYE32_RS00715 WP_175057370.1 124162..124659(+) (comX/sigX) [Streptococcus sp. FSL R7-0248]
ATGGAACAAGAAGTTTTTGTTCATGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAGGAAGCAATGATGACACTTTATCAGCTTTTAAAAAAGTTTCCTGAGTTAGCGT
CTGATGATGATAAGCTTCGACGTTATTTCAAAACTAAGTTTAGGAATAGGTTGAATGATGAGGTTAGAAGACAGGAGTCT
GTAAAACGACAAGCTAATAGACAATGTTATATCGAAATTTCAGATATTGCTTTTTGTCTTCCGAATAAAGAGTTAGATGC
GGTAGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTCTGCTAGCTGGAGAATGTTTTAGAGGTCGAAAAAAGATGATCAGGGAGTTAAAATTTTGGATGGTAGATTTTGATCCT
TATAATGAAGAAGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.