Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   WE862_RS17380 Genome accession   NZ_CP149571
Coordinates   3730693..3731832 (+) Length   379 a.a.
NCBI ID   WP_041208567.1    Uniprot ID   -
Organism   Aeromonas jandaei strain DSM 7311     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3725693..3736832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WE862_RS17355 (WE862_17355) - 3726076..3727140 (+) 1065 WP_041208564.1 3-deoxy-7-phosphoheptulonate synthase -
  WE862_RS17360 (WE862_17360) - 3727548..3728333 (-) 786 WP_042031218.1 ATP-binding cassette domain-containing protein -
  WE862_RS17365 (WE862_17365) btuC 3728320..3729327 (-) 1008 WP_042031219.1 vitamin B12 ABC transporter permease BtuC -
  WE862_RS17370 (WE862_17370) - 3729430..3730164 (-) 735 WP_042031221.1 transporter substrate-binding domain-containing protein -
  WE862_RS17375 (WE862_17375) - 3730277..3730633 (+) 357 WP_005302630.1 DMT family protein -
  WE862_RS17380 (WE862_17380) pilU 3730693..3731832 (+) 1140 WP_041208567.1 type IVa pilus ATPase TapW Machinery gene
  WE862_RS17385 (WE862_17385) - 3731899..3732348 (-) 450 WP_042031222.1 isoprenylcysteine carboxylmethyltransferase family protein -
  WE862_RS17390 (WE862_17390) alr 3732524..3733750 (+) 1227 WP_042031223.1 alanine racemase -
  WE862_RS17395 (WE862_17395) - 3733807..3734751 (-) 945 WP_042031224.1 TerC family protein -
  WE862_RS17400 (WE862_17400) oppF 3735054..3736049 (-) 996 WP_033114332.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42273.33 Da        Isoelectric Point: 6.6722

>NTDB_id=959904 WE862_RS17380 WP_041208567.1 3730693..3731832(+) (pilU) [Aeromonas jandaei strain DSM 7311]
MELRDMLQTLAKQDGSDLYLSTGAPPCAKFNGVLRPLNETPLNPGDVAAIAEAIMDKEQKEQFERELEMNLAISLPQIGR
FRINIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEIMLGTHTIRDMIKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIDEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKGDHF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=959904 WE862_RS17380 WP_041208567.1 3730693..3731832(+) (pilU) [Aeromonas jandaei strain DSM 7311]
ATGGAATTGCGAGACATGTTACAGACCCTGGCCAAACAGGATGGCTCCGACCTCTATCTGTCGACCGGCGCCCCCCCCTG
CGCCAAATTCAACGGGGTGCTGCGTCCCCTGAATGAGACACCGCTCAACCCGGGCGATGTGGCGGCCATTGCCGAGGCCA
TCATGGACAAGGAGCAGAAGGAGCAGTTCGAGCGGGAGCTGGAGATGAACCTCGCCATCTCGCTACCGCAGATCGGCCGT
TTCCGGATCAACATCTTCAAGCAGCGCAATGAAGTGTCGCTGGTAGCCCGCAACATCAAGACCGAGATCCCCCGCTTCGA
AGATCTGAAACTGCCCCCCGTGCTGCTCGATACCATCATGGAGAAGCGCGGACTGGTGCTGTTTGTCGGCGGTACCGGCT
CGGGTAAATCGACCTCGCTGGCCGCCCTCATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAAGAT
CCGGTGGAGTTCGTTCATCGCCACCGCAAGAGCATCATCAATCAGCGGGAAGTGGGCGTGGATACCCGCAGCTTCCACGC
CGCCCTGAAAAACACCCTGCGTCAGGCACCCGACGTCATCCTCATCGGGGAAATTCGCGACCGCGAAACCATGGAGCATG
CGCTGGCCTTCTCCGAAACCGGCCACCTCGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGGAAGAACGCCGCCCCCAGCTGCTCAACGACCTTGGCAACAACCTCAAGGCGTTTGTCTCCCAGCG
GCTGGTGAAGACCACCGATGGCGGGCGCCGGGCCGCAGTGGAGATCATGCTGGGCACCCACACCATCCGCGACATGATCA
AGCGCGGCGAGTTTGGCGGCCTCAAGGAGGTGATGGAGAAATCCAAGGCCCTCGGCATGGTCACCTTCGACAGCGCCCTG
TTCGATCTGGTGGTGGAGGGAGTGATCGATGAGGAGGAGGCGGTGAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GATCAAGCTATGGAAGGAGAAGGGCCAGATCGCCAGCAGCAGCGATGCCACCGGCTGGAGTCTGGAGCCAACCAAGGACG
AGAAGGGCGACCATTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.211

100

0.544
  pilU Acinetobacter baylyi ADP1

52.676

93.668

0.493
  pilU Vibrio cholerae strain A1552

50.857

92.348

0.47
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.36

93.14

0.385
  pilT Legionella pneumophila strain ERS1305867

42.216

88.127

0.372
  pilT Legionella pneumophila strain Lp02

42.216

88.127

0.372
  pilT Pseudomonas aeruginosa PAK

40.988

90.765

0.372
  pilT Pseudomonas stutzeri DSM 10701

40.698

90.765

0.369
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.441

87.863

0.364
  pilT Vibrio cholerae strain A1552

41.441

87.863

0.364
  pilT Acinetobacter baumannii D1279779

41.018

88.127

0.361
  pilT Acinetobacter baumannii strain A118

41.018

88.127

0.361
  pilT Acinetobacter nosocomialis M2

41.018

88.127

0.361