Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   V6U70_RS00790 Genome accession   NZ_CP145868
Coordinates   132513..133010 (+) Length   165 a.a.
NCBI ID   WP_021143466.1    Uniprot ID   A0AB33ZG65
Organism   Streptococcus salivarius strain KSS12     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 127513..138010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS00790 (V6U70_00790) comX/sigX 132513..133010 (+) 498 WP_021143466.1 sigma factor Regulator
  V6U70_RS00795 (V6U70_00795) - 133123..133965 (-) 843 WP_041826643.1 mechanosensitive ion channel family protein -
  V6U70_RS00800 (V6U70_00800) tig 134108..135391 (+) 1284 WP_002885606.1 trigger factor -
  V6U70_RS00805 (V6U70_00805) rpoE 135549..136124 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  V6U70_RS00810 (V6U70_00810) - 136377..137981 (+) 1605 WP_022496517.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20023.81 Da        Isoelectric Point: 4.9953

>NTDB_id=940820 V6U70_RS00790 WP_021143466.1 132513..133010(+) (comX/sigX) [Streptococcus salivarius strain KSS12]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=940820 V6U70_RS00790 WP_021143466.1 132513..133010(+) (comX/sigX) [Streptococcus salivarius strain KSS12]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAGGTTGTTAGGCCGATTGTACTTAAGGCTAGTCGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAAGAAGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGATATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCTAATCGACAATGTTATATCGAAATTTCAGATATTGCTTTTTGTCTTCCGAATAAAGAGTTAGATGC
GGTAGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTCTGCTAGCTGGAGAATGTTTTAGAGGTCGAAAAAAGATGATCAGGGAGTTAAAATTTTGGATGGTAGATTTTGATCCT
TATAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.