Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   V6U64_RS09445 Genome accession   NZ_CP145862
Coordinates   2047719..2048216 (-) Length   165 a.a.
NCBI ID   WP_002885610.1    Uniprot ID   A0A2I1TJX9
Organism   Streptococcus salivarius strain KSS4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2048952..2049242 2047719..2048216 flank 736


Gene organization within MGE regions


Location: 2047719..2049242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS09445 (V6U64_09450) comX 2047719..2048216 (-) 498 WP_002885610.1 sigma factor Regulator
  V6U64_RS09450 (V6U64_09455) tnpA 2048769..2049242 (-) 474 Protein_1842 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20008.84 Da        Isoelectric Point: 4.9953

>NTDB_id=940476 V6U64_RS09445 WP_002885610.1 2047719..2048216(-) (comX) [Streptococcus salivarius strain KSS4]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDLADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=940476 V6U64_RS09445 WP_002885610.1 2047719..2048216(-) (comX) [Streptococcus salivarius strain KSS4]
ATGGAACAAGAAGTTTTTGTTCATGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCTTGCTGATATGGAGCAAGAGGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGTTATTTTAAAACTAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGTCAAGCTAATCGACAATGTTATATTGAAATTTCAGATATTGCTTTTTGTCTTCCAAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGAAAAAAGATGATCAGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1TJX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.