Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   V6U63_RS00760 Genome accession   NZ_CP145861
Coordinates   127908..128405 (+) Length   165 a.a.
NCBI ID   WP_021143466.1    Uniprot ID   A0AB33ZG65
Organism   Streptococcus salivarius strain KSS3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 122908..133405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS00760 (V6U63_00760) comX/sigX 127908..128405 (+) 498 WP_021143466.1 sigma factor Regulator
  V6U63_RS00765 (V6U63_00765) - 128513..129355 (-) 843 WP_037605435.1 mechanosensitive ion channel family protein -
  V6U63_RS00770 (V6U63_00770) tig 129498..130781 (+) 1284 WP_002885606.1 trigger factor -
  V6U63_RS00775 (V6U63_00775) rpoE 130939..131514 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  V6U63_RS00780 (V6U63_00780) - 131767..133371 (+) 1605 WP_410535136.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20023.81 Da        Isoelectric Point: 4.9953

>NTDB_id=940351 V6U63_RS00760 WP_021143466.1 127908..128405(+) (comX/sigX) [Streptococcus salivarius strain KSS3]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=940351 V6U63_RS00760 WP_021143466.1 127908..128405(+) (comX/sigX) [Streptococcus salivarius strain KSS3]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAGGTTGTTAGGCCGATTGTACTTAAGGCTAGTCGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAAGAAGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGTTATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCCAATAGACAATGTTATATTGAAATTTCAGATATTGCTTTTTGTCTTCCAAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGGAAAAAGATGATTCGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.