Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   V6U62_RS09305 Genome accession   NZ_CP145860
Coordinates   2019979..2020476 (-) Length   165 a.a.
NCBI ID   WP_021143466.1    Uniprot ID   A0AB33ZG65
Organism   Streptococcus salivarius strain KSS2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2014979..2025476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS09285 (V6U62_09270) - 2015013..2016617 (-) 1605 WP_410535136.1 CTP synthase -
  V6U62_RS09290 (V6U62_09275) rpoE 2016870..2017445 (-) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  V6U62_RS09295 (V6U62_09280) tig 2017603..2018886 (-) 1284 WP_002885606.1 trigger factor -
  V6U62_RS09300 (V6U62_09285) - 2019029..2019871 (+) 843 WP_037605435.1 mechanosensitive ion channel family protein -
  V6U62_RS09305 (V6U62_09290) comX/sigX 2019979..2020476 (-) 498 WP_021143466.1 sigma factor Regulator

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20023.81 Da        Isoelectric Point: 4.9953

>NTDB_id=940342 V6U62_RS09305 WP_021143466.1 2019979..2020476(-) (comX/sigX) [Streptococcus salivarius strain KSS2]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=940342 V6U62_RS09305 WP_021143466.1 2019979..2020476(-) (comX/sigX) [Streptococcus salivarius strain KSS2]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAGGTTGTTAGGCCGATTGTACTTAAGGCTAGTCGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAAGAAGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGTTATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCCAATAGACAATGTTATATTGAAATTTCAGATATTGCTTTTTGTCTTCCAAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGGAAAAAGATGATTCGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.