Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   V6T26_RS09450 Genome accession   NZ_CP145858
Coordinates   2028735..2029232 (-) Length   165 a.a.
NCBI ID   WP_175057370.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2023735..2034232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS09430 (V6T26_09415) - 2023764..2025368 (-) 1605 WP_410541255.1 CTP synthase -
  V6T26_RS09435 (V6T26_09420) rpoE 2025621..2026196 (-) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  V6T26_RS09440 (V6T26_09425) tig 2026354..2027637 (-) 1284 WP_002885606.1 trigger factor -
  V6T26_RS09445 (V6T26_09430) - 2027780..2028622 (+) 843 WP_410541256.1 mechanosensitive ion channel family protein -
  V6T26_RS09450 (V6T26_09435) comX/sigX 2028735..2029232 (-) 498 WP_175057370.1 sigma-70 family RNA polymerase sigma factor Regulator
  V6T26_RS09455 (V6T26_09440) - 2029727..2030404 (+) 678 WP_049545350.1 helix-turn-helix domain-containing protein -
  V6T26_RS09460 (V6T26_09445) - 2030401..2031366 (+) 966 WP_410541257.1 IS3 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19979.80 Da        Isoelectric Point: 5.1688

>NTDB_id=940275 V6T26_RS09450 WP_175057370.1 2028735..2029232(-) (comX/sigX) [Streptococcus salivarius strain KSS11]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLKKFPELASDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=940275 V6T26_RS09450 WP_175057370.1 2028735..2029232(-) (comX/sigX) [Streptococcus salivarius strain KSS11]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAGGAAGCAATGATGACACTTTATCAGCTTTTAAAAAAGTTTCCTGAGTTAGCGT
CTGATGATGATAAGCTTCGACGTTATTTCAAAACTAAGTTTAGGAATAGGTTGAATGATGAGGTTAGAAGACAGGAGTCT
GTAAAACGACAAGCTAATAGACAATGTTATATCGAAATTTCAGATATTGCTTTTTGTCTTCCGAATAAAGAGTTAGATGC
GGTAGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTCTGCTAGCTGGAGAATGTTTTAGAGGTCGAAAAAAGATGATCAGGGAGTTAAAATTTTGGATGGTAGATTTTGATCCT
TATAATGAAGAAGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.