Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   V6T01_RS00790 Genome accession   NZ_CP145856
Coordinates   134664..135161 (+) Length   165 a.a.
NCBI ID   WP_175057370.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 129664..140161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS00780 (V6T01_00780) - 132530..133495 (-) 966 WP_410541257.1 IS3 family transposase -
  V6T01_RS00785 (V6T01_00785) - 133492..134169 (-) 678 WP_049545350.1 helix-turn-helix domain-containing protein -
  V6T01_RS00790 (V6T01_00790) comX/sigX 134664..135161 (+) 498 WP_175057370.1 sigma-70 family RNA polymerase sigma factor Regulator
  V6T01_RS00795 (V6T01_00795) - 135274..136116 (-) 843 WP_410541256.1 mechanosensitive ion channel family protein -
  V6T01_RS00800 (V6T01_00800) tig 136259..137542 (+) 1284 WP_002885606.1 trigger factor -
  V6T01_RS00805 (V6T01_00805) rpoE 137700..138275 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  V6T01_RS00810 (V6T01_00810) - 138528..140132 (+) 1605 WP_410541255.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19979.80 Da        Isoelectric Point: 5.1688

>NTDB_id=940155 V6T01_RS00790 WP_175057370.1 134664..135161(+) (comX/sigX) [Streptococcus salivarius strain KSS1]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLKKFPELASDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=940155 V6T01_RS00790 WP_175057370.1 134664..135161(+) (comX/sigX) [Streptococcus salivarius strain KSS1]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAGGAAGCAATGATGACACTTTATCAGCTTTTAAAAAAGTTTCCTGAGTTAGCGT
CTGATGATGATAAGCTTCGACGTTATTTCAAAACTAAGTTTAGGAATAGGTTGAATGATGAGGTTAGAAGACAGGAGTCT
GTAAAACGACAAGCTAATAGACAATGTTATATCGAAATTTCAGATATTGCTTTTTGTCTTCCGAATAAAGAGTTAGATGC
GGTAGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTCTGCTAGCTGGAGAATGTTTTAGAGGTCGAAAAAAGATGATCAGGGAGTTAAAATTTTGGATGGTAGATTTTGATCCT
TATAATGAAGAAGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.