Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   Aerorivi_RS08715 Genome accession   NZ_CP144176
Coordinates   1859929..1861068 (-) Length   379 a.a.
NCBI ID   WP_171276387.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain DSM 24593     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854929..1866068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aerorivi_RS08690 (Aerorivi_01757) - 1855053..1855382 (-) 330 WP_283940975.1 translation initiation factor -
  Aerorivi_RS08695 (Aerorivi_01758) - 1855503..1855730 (+) 228 WP_171276390.1 FeoA family protein -
  Aerorivi_RS08700 (Aerorivi_01759) feoB 1855727..1857997 (+) 2271 WP_412706389.1 Fe(2+) transporter permease subunit FeoB -
  Aerorivi_RS08705 (Aerorivi_01760) - 1858041..1858283 (+) 243 WP_371165591.1 FeoC-like transcriptional regulator -
  Aerorivi_RS08710 (Aerorivi_01761) glgC 1858386..1859657 (-) 1272 WP_041205992.1 glucose-1-phosphate adenylyltransferase -
  Aerorivi_RS08715 (Aerorivi_01762) pilU 1859929..1861068 (-) 1140 WP_171276387.1 type IVa pilus ATPase TapW Machinery gene
  Aerorivi_RS08720 (Aerorivi_01763) - 1861123..1861479 (-) 357 WP_005328056.1 DMT family protein -
  Aerorivi_RS08725 (Aerorivi_01764) - 1861592..1862323 (+) 732 WP_404834017.1 substrate-binding periplasmic protein -
  Aerorivi_RS08730 (Aerorivi_01765) btuC 1862409..1863416 (+) 1008 WP_412706390.1 vitamin B12 ABC transporter permease BtuC -
  Aerorivi_RS08735 (Aerorivi_01766) - 1863403..1864188 (+) 786 WP_050504384.1 ATP-binding cassette domain-containing protein -
  Aerorivi_RS08740 (Aerorivi_01767) aac(6') 1864210..1864668 (-) 459 WP_412706391.1 aminoglycoside 6'-N-acetyltransferase -
  Aerorivi_RS08745 (Aerorivi_01768) - 1864675..1865739 (-) 1065 WP_412706392.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42370.39 Da        Isoelectric Point: 6.4288

>NTDB_id=932578 Aerorivi_RS08715 WP_171276387.1 1859929..1861068(-) (pilU) [Aeromonas rivipollensis strain DSM 24593]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGALRPLNEVPLEPGEVARIAADLMDSEQKQQFEKELEMNLAISLPQIGR
FRVNIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTEGGRRAAVEVMIGTHTIRDLIKRGEFGGLKDIMEKSRALGMVTFDSTL
FDLVVEGVIDEEEAVKNADSQNNLRLKIKLWKEKGQIGNSAEASGWSLEPSKDENNDIF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=932578 Aerorivi_RS08715 WP_171276387.1 1859929..1861068(-) (pilU) [Aeromonas rivipollensis strain DSM 24593]
ATGGAATTGCGAGACATGCTACAGATCCTGGCCAAGCAGGATGGCTCCGACCTCTATCTCTCCACCGGGGCCCCCCCCTG
CGCCAAGTTCAATGGCGCCCTGCGCCCCTTGAACGAGGTGCCGCTCGAGCCGGGCGAAGTGGCCAGGATTGCCGCCGATC
TCATGGACTCGGAGCAGAAGCAGCAATTCGAGAAGGAGCTGGAGATGAACCTCGCCATCTCCCTGCCCCAGATAGGCCGG
TTTCGGGTCAACATCTTCAAGCAGCGCAACGAAGTCTCCCTGGTGGCGCGCAACATCAAGACCGAGATCCCCCGTTTCGA
GGATCTCAAACTCCCCCCGGTGCTGCTCGACACCATCATGGAGAAGCGCGGCCTGGTGCTCTTCGTCGGTGGCACCGGAT
CTGGCAAGTCCACCTCGCTTGCGGCGCTCATCGACCACCGCAACCGCAACAGCGGTGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTCCATCGCCACCGCAAGAGCATCATCAACCAGCGAGAGGTGGGGGTGGACACCCGCAGCTTCCACGC
GGCCCTGAAGAACACCCTGCGCCAGGCACCGGACGTCATCCTCATCGGTGAGATCCGTGACCGGGAGACCATGGAGCATG
CGCTGGCCTTCTCGGAGACCGGGCATCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAGGAGCGCAGGCCCCAGCTGCTCAACGATCTTGGCAACAACCTCAAGGCCTTCGTCTCCCAGCG
GCTGGTGAAGACCACCGAGGGTGGCCGCCGGGCGGCGGTGGAGGTCATGATCGGCACCCACACCATTCGCGATCTCATCA
AGCGCGGCGAGTTTGGCGGCCTCAAGGATATCATGGAGAAATCCAGGGCCCTTGGCATGGTCACCTTCGACAGCACCCTG
TTCGATCTGGTGGTGGAGGGGGTGATCGACGAGGAGGAGGCGGTCAAGAACGCCGATTCCCAGAACAACCTGCGCCTCAA
GATCAAGCTGTGGAAGGAAAAGGGGCAGATAGGCAACAGTGCGGAGGCCAGCGGCTGGAGCCTGGAGCCCAGCAAGGATG
AGAACAACGATATCTTCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.667

98.945

0.541
  pilU Acinetobacter baylyi ADP1

52.394

93.668

0.491
  pilU Vibrio cholerae strain A1552

50

92.348

0.462
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.305

98.681

0.388
  pilT Pseudomonas aeruginosa PAK

41.57

90.765

0.377
  pilT Legionella pneumophila strain ERS1305867

42.515

88.127

0.375
  pilT Legionella pneumophila strain Lp02

42.515

88.127

0.375
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.171

92.612

0.372
  pilT Vibrio cholerae strain A1552

40.171

92.612

0.372
  pilT Pseudomonas stutzeri DSM 10701

40.988

90.765

0.372
  pilT Acinetobacter baumannii D1279779

41.916

88.127

0.369
  pilT Acinetobacter baumannii strain A118

41.916

88.127

0.369
  pilT Acinetobacter nosocomialis M2

41.916

88.127

0.369