Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   V1501_RS20160 Genome accession   NZ_CP143545
Coordinates   4008783..4009094 (-) Length   103 a.a.
NCBI ID   WP_409290654.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4003783..4014094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS20145 (V1501_20145) - 4004259..4007165 (+) 2907 WP_409290651.1 DEAD/DEAH box helicase -
  V1501_RS20150 (V1501_20150) - 4007256..4007738 (-) 483 WP_409290652.1 helix-turn-helix domain-containing protein -
  V1501_RS20155 (V1501_20155) - 4008395..4008706 (-) 312 WP_409290653.1 hypothetical protein -
  V1501_RS20160 (V1501_20160) ssbB 4008783..4009094 (-) 312 WP_409290654.1 single-stranded DNA-binding protein Machinery gene
  V1501_RS20165 (V1501_20165) - 4009408..4009839 (+) 432 WP_409290655.1 YwpF family protein -
  V1501_RS20170 (V1501_20170) - 4009881..4010228 (-) 348 WP_409290656.1 hypothetical protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11482.03 Da        Isoelectric Point: 9.5815

>NTDB_id=929527 V1501_RS20160 WP_409290654.1 4008783..4009094(-) (ssbB) [Peribacillus sp. SCS-37]
MINQVTLVGRLTRDPELKFTSEGKAVSNVVLAVNRTFKNAAGEFEADFVQCTLWRKSAENTSQYCKKGSLVGVTGRIQTR
NYNNSEGKKTYVTEVIAESVQFL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=929527 V1501_RS20160 WP_409290654.1 4008783..4009094(-) (ssbB) [Peribacillus sp. SCS-37]
ATGATCAACCAGGTTACACTGGTGGGCAGACTGACAAGGGATCCTGAGCTGAAGTTCACATCCGAAGGAAAAGCCGTATC
CAATGTCGTGCTTGCCGTCAACCGCACCTTCAAAAATGCAGCAGGCGAATTTGAAGCAGACTTCGTCCAATGCACACTCT
GGCGGAAATCCGCTGAAAACACGAGTCAATACTGCAAAAAAGGATCACTCGTCGGCGTAACCGGCCGCATCCAGACCCGG
AACTACAACAACTCTGAAGGCAAAAAAACCTATGTCACCGAAGTCATCGCAGAATCCGTCCAATTCCTGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.932

100

0.689
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.136

100

0.621
  ssb Latilactobacillus sakei subsp. sakei 23K

59.223

100

0.592
  ssbB Lactococcus lactis subsp. cremoris KW2

49.02

99.029

0.485
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.544

100

0.485
  ssbB/cilA Streptococcus mitis NCTC 12261

45.631

100

0.456
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.631

100

0.456
  ssbA Streptococcus mutans UA159

45.631

100

0.456
  ssbB/cilA Streptococcus pneumoniae Rx1

44.66

100

0.447
  ssbB/cilA Streptococcus pneumoniae D39

44.66

100

0.447
  ssbB/cilA Streptococcus pneumoniae R6

44.66

100

0.447
  ssbB/cilA Streptococcus mitis SK321

44.66

100

0.447
  ssb Neisseria gonorrhoeae MS11

36.538

100

0.369
  ssb Neisseria meningitidis MC58

36.538

100

0.369