Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   V1498_RS20885 Genome accession   NZ_CP143542
Coordinates   4148253..4148564 (-) Length   103 a.a.
NCBI ID   WP_409296026.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4143253..4153564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS20865 (V1498_20865) - 4143748..4146654 (+) 2907 WP_409296019.1 DEAD/DEAH box helicase -
  V1498_RS20870 (V1498_20870) - 4146747..4147229 (-) 483 WP_409296021.1 helix-turn-helix domain-containing protein -
  V1498_RS20875 (V1498_20875) - 4147389..4147490 (-) 102 WP_409296023.1 hypothetical protein -
  V1498_RS20880 (V1498_20880) - 4147892..4148203 (-) 312 WP_409296025.1 hypothetical protein -
  V1498_RS20885 (V1498_20885) ssbB 4148253..4148564 (-) 312 WP_409296026.1 single-stranded DNA-binding protein Machinery gene
  V1498_RS20890 (V1498_20890) - 4148877..4149308 (+) 432 WP_409296027.1 YwpF family protein -
  V1498_RS20895 (V1498_20895) - 4149349..4149696 (-) 348 WP_409296029.1 hypothetical protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11490.09 Da        Isoelectric Point: 9.5815

>NTDB_id=929432 V1498_RS20885 WP_409296026.1 4148253..4148564(-) (ssbB) [Peribacillus sp. SCS-26]
MINQVTLVGRLTRDPELKFTPEGKAVSNVVLAVNRTFKNAAGEFEADFVQCTLWRKSAENTSQYCKKGSIVGVTGRIQTR
NYNNSDGKKIYVTEVIAESVQFL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=929432 V1498_RS20885 WP_409296026.1 4148253..4148564(-) (ssbB) [Peribacillus sp. SCS-26]
ATGATCAACCAGGTTACACTGGTGGGCAGACTGACAAGGGATCCTGAGCTGAAGTTCACACCCGAAGGAAAAGCCGTATC
CAATGTCGTGCTTGCAGTCAACCGCACCTTCAAAAATGCAGCAGGCGAATTCGAAGCAGACTTCGTCCAATGCACCCTCT
GGCGGAAATCCGCTGAAAACACCAGCCAGTATTGTAAAAAAGGATCTATCGTCGGCGTAACCGGCCGCATCCAAACCCGG
AACTACAACAACTCCGATGGCAAAAAAATCTACGTCACCGAAGTCATCGCAGAATCCGTCCAATTCCTGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.019

100

0.66
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.136

100

0.621
  ssb Latilactobacillus sakei subsp. sakei 23K

57.282

100

0.573
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.515

100

0.495
  ssbB Lactococcus lactis subsp. cremoris KW2

48.039

99.029

0.476
  ssbA Streptococcus mutans UA159

46.602

100

0.466
  ssbB/cilA Streptococcus mitis NCTC 12261

44.66

100

0.447
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.66

100

0.447
  ssbB/cilA Streptococcus pneumoniae Rx1

43.689

100

0.437
  ssbB/cilA Streptococcus pneumoniae D39

43.689

100

0.437
  ssbB/cilA Streptococcus pneumoniae R6

43.689

100

0.437
  ssbB/cilA Streptococcus mitis SK321

43.689

100

0.437
  ssb Neisseria meningitidis MC58

37.5

100

0.379
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.379