Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VNN48_RS07530 Genome accession   NZ_CP141723
Coordinates   1545197..1545502 (+) Length   101 a.a.
NCBI ID   WP_017368746.1    Uniprot ID   -
Organism   Lactococcus formosensis strain PAQ-208     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540197..1550502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS07510 (VNN48_07505) guaB 1541305..1542786 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  VNN48_RS07515 (VNN48_07510) rpsU 1542911..1543087 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN48_RS07520 (VNN48_07515) comGA 1543276..1544220 (+) 945 WP_347962685.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN48_RS07525 (VNN48_07520) comGB 1544159..1545178 (+) 1020 WP_407281527.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN48_RS07530 (VNN48_07525) comYC 1545197..1545502 (+) 306 WP_017368746.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN48_RS07535 (VNN48_07530) comGD 1545477..1545893 (+) 417 WP_279365405.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN48_RS07540 (VNN48_07535) comGE 1545925..1546158 (+) 234 WP_243416060.1 competence type IV pilus minor pilin ComGE -
  VNN48_RS07545 (VNN48_07540) comGF 1546145..1546579 (+) 435 WP_407281014.1 competence type IV pilus minor pilin ComGF -
  VNN48_RS07550 (VNN48_07545) - 1546815..1547660 (+) 846 WP_017368750.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  VNN48_RS07555 (VNN48_07550) - 1547747..1548616 (-) 870 WP_407281016.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11263.19 Da        Isoelectric Point: 10.0997

>NTDB_id=918937 VNN48_RS07530 WP_017368746.1 1545197..1545502(+) (comYC) [Lactococcus formosensis strain PAQ-208]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQAAVVKVVEGQAELYQLDKQDGPSLGKLVSGGLITQK
QADSYNDYYTKNPNAKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=918937 VNN48_RS07530 WP_017368746.1 1545197..1545502(+) (comYC) [Lactococcus formosensis strain PAQ-208]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTTTTACTTTTATT
GTTTGTTCCAAACTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAGCAGCAGTTGTTAAAGTTGTCGAAGGGC
AAGCCGAACTTTATCAACTTGATAAACAGGATGGTCCAAGTTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAG
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCTAATGCAAAACGTAATGTCCCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

66.316

94.059

0.624
  comYC Streptococcus mutans UA159

66.316

94.059

0.624
  comGC/cglC Streptococcus mitis SK321

63.636

98.02

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae Rx1

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae D39

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae R6

59.596

98.02

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396