Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN48_RS07535 Genome accession   NZ_CP141723
Coordinates   1545477..1545893 (+) Length   138 a.a.
NCBI ID   WP_279365405.1    Uniprot ID   -
Organism   Lactococcus formosensis strain PAQ-208     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540477..1550893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS07510 (VNN48_07505) guaB 1541305..1542786 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  VNN48_RS07515 (VNN48_07510) rpsU 1542911..1543087 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN48_RS07520 (VNN48_07515) comGA 1543276..1544220 (+) 945 WP_347962685.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN48_RS07525 (VNN48_07520) comGB 1544159..1545178 (+) 1020 WP_407281527.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN48_RS07530 (VNN48_07525) comYC 1545197..1545502 (+) 306 WP_017368746.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN48_RS07535 (VNN48_07530) comGD 1545477..1545893 (+) 417 WP_279365405.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN48_RS07540 (VNN48_07535) comGE 1545925..1546158 (+) 234 WP_243416060.1 competence type IV pilus minor pilin ComGE -
  VNN48_RS07545 (VNN48_07540) comGF 1546145..1546579 (+) 435 WP_407281014.1 competence type IV pilus minor pilin ComGF -
  VNN48_RS07550 (VNN48_07545) - 1546815..1547660 (+) 846 WP_017368750.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  VNN48_RS07555 (VNN48_07550) - 1547747..1548616 (-) 870 WP_407281016.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15876.49 Da        Isoelectric Point: 10.1981

>NTDB_id=918938 VNN48_RS07535 WP_279365405.1 1545477..1545893(+) (comGD) [Lactococcus formosensis strain PAQ-208]
MQNVMSRIKALTLLESLLVLFLCSFVLFLFSSSVKQSVRIARSEIFILQFERLYKDTQRMAGLKGQRQTLSARNGTLYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQRITIFLPYQKKTISYQLEIGSGKYKKSIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918938 VNN48_RS07535 WP_279365405.1 1545477..1545893(+) (comGD) [Lactococcus formosensis strain PAQ-208]
ATGCAAAACGTAATGTCCCGAATTAAAGCTTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAAGTTCGGTGAAACAAAGTGTGAGGATAGCACGTTCAGAGATTTTTATTTTACAATTTGAACGTCTGT
ATAAGGATACCCAGCGCATGGCGGGACTAAAGGGGCAGCGACAGACATTGAGTGCGCGTAATGGCACACTATATAGCCAA
GAAGAAATGTTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAGAATCACAATATTTCTTCCCTATCAGAAAAAAACGATCTCTTATCAATTGGAAATTGGAAGTGGAAAATATA
AGAAGAGCATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

40.602

96.377

0.391
  comYD Streptococcus mutans UA159

40.602

96.377

0.391
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

38.76

93.478

0.362