Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VNN37_RS03345 Genome accession   NZ_CP141707
Coordinates   650556..650861 (-) Length   101 a.a.
NCBI ID   WP_016171026.1    Uniprot ID   -
Organism   Lactococcus garvieae strain M21102102     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 645556..655861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS03315 (VNN37_03315) - 647446..648315 (+) 870 WP_339000652.1 RluA family pseudouridine synthase -
  VNN37_RS03320 (VNN37_03320) - 648401..649246 (-) 846 WP_339000654.1 zinc ABC transporter substrate-binding protein -
  VNN37_RS03325 (VNN37_03325) - 649309..649470 (-) 162 WP_264308322.1 hypothetical protein -
  VNN37_RS03330 (VNN37_03330) comGF 649479..649919 (-) 441 WP_339000658.1 competence type IV pilus minor pilin ComGF -
  VNN37_RS03335 (VNN37_03335) comGE 649900..650133 (-) 234 WP_229031266.1 competence type IV pilus minor pilin ComGE -
  VNN37_RS03340 (VNN37_03340) comGD 650165..650581 (-) 417 WP_339000660.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN37_RS03345 (VNN37_03345) comYC 650556..650861 (-) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN37_RS03350 (VNN37_03350) comGB 650880..651899 (-) 1020 WP_339000849.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN37_RS03355 (VNN37_03355) comGA 651838..652782 (-) 945 WP_339000850.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN37_RS03360 (VNN37_03360) rpsU 652971..653147 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN37_RS03365 (VNN37_03365) guaB 653270..654751 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11397.28 Da        Isoelectric Point: 9.9218

>NTDB_id=918627 VNN37_RS03345 WP_016171026.1 650556..650861(-) (comYC) [Lactococcus garvieae strain M21102102]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=918627 VNN37_RS03345 WP_016171026.1 650556..650861(-) (comYC) [Lactococcus garvieae strain M21102102]
ATGGAAAAAAAGAGATTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAAGTTGTCGAAGGTC
AAGCCGAACTTTATCAGCTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCTGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCAAATGAAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

67.368

94.059

0.634
  comYC Streptococcus mutans UA159

67.368

94.059

0.634
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus mitis SK321

61.616

98.02

0.604
  comGC/cglC Streptococcus pneumoniae Rx1

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae D39

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae TIGR4

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae R6

57.576

98.02

0.564
  comGC/cglC Streptococcus mitis NCTC 12261

61.538

90.099

0.554
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

49.367

78.218

0.386
  comGC Staphylococcus aureus N315

49.367

78.218

0.386