Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN37_RS03340 Genome accession   NZ_CP141707
Coordinates   650165..650581 (-) Length   138 a.a.
NCBI ID   WP_339000660.1    Uniprot ID   -
Organism   Lactococcus garvieae strain M21102102     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 645165..655581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS03315 (VNN37_03315) - 647446..648315 (+) 870 WP_339000652.1 RluA family pseudouridine synthase -
  VNN37_RS03320 (VNN37_03320) - 648401..649246 (-) 846 WP_339000654.1 zinc ABC transporter substrate-binding protein -
  VNN37_RS03325 (VNN37_03325) - 649309..649470 (-) 162 WP_264308322.1 hypothetical protein -
  VNN37_RS03330 (VNN37_03330) comGF 649479..649919 (-) 441 WP_339000658.1 competence type IV pilus minor pilin ComGF -
  VNN37_RS03335 (VNN37_03335) comGE 649900..650133 (-) 234 WP_229031266.1 competence type IV pilus minor pilin ComGE -
  VNN37_RS03340 (VNN37_03340) comGD 650165..650581 (-) 417 WP_339000660.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN37_RS03345 (VNN37_03345) comYC 650556..650861 (-) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN37_RS03350 (VNN37_03350) comGB 650880..651899 (-) 1020 WP_339000849.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN37_RS03355 (VNN37_03355) comGA 651838..652782 (-) 945 WP_339000850.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN37_RS03360 (VNN37_03360) rpsU 652971..653147 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN37_RS03365 (VNN37_03365) guaB 653270..654751 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15834.54 Da        Isoelectric Point: 10.0791

>NTDB_id=918626 VNN37_RS03340 WP_339000660.1 650165..650581(-) (comGD) [Lactococcus garvieae strain M21102102]
MKNVMYRIKALTLLESLLVLFLCSFVLFLFSGSVKQSVRIVRAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGALYSQ
EEMVKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918626 VNN37_RS03340 WP_339000660.1 650165..650581(-) (comGD) [Lactococcus garvieae strain M21102102]
ATGAAAAACGTAATGTACCGAATTAAAGCCTTGACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGTTCTTTTGTTCT
TTTTCTATTTTCAGGTTCAGTCAAACAAAGTGTGAGGATAGTACGCGCAGAGATTTTTATTTTACAATTTGAACGTCTTT
ATAAGGATACCCAACGCATGGCGGGACTAAAGGGACAGCAACAGACGTTGAGTGCGAGCAATGGTGCACTCTATAGCCAA
GAGGAAATGGTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACAATCTCTTATCAATTGGAGATTGGAAGCGGAAAATATA
AGAAAAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

41.667

95.652

0.399
  comYD Streptococcus mutans UA159

41.667

95.652

0.399
  comGD/cglD Streptococcus mitis SK321

40.31

93.478

0.377
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362