Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   U8518_RS05225 Genome accession   NZ_CP141267
Coordinates   1124890..1126029 (-) Length   379 a.a.
NCBI ID   WP_011706550.1    Uniprot ID   A0AAI9Q2R8
Organism   Aeromonas hydrophila strain MaAh001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1119890..1131029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8518_RS05205 (U8518_05205) feoB 1120104..1122377 (+) 2274 WP_101148938.1 Fe(2+) transporter permease subunit FeoB -
  U8518_RS05210 (U8518_05210) - 1122374..1122616 (+) 243 WP_101148937.1 FeoC-like transcriptional regulator -
  U8518_RS05215 (U8518_05215) - 1122720..1123199 (-) 480 WP_180807321.1 WbuC family cupin fold metalloprotein -
  U8518_RS05220 (U8518_05220) glgC 1123335..1124606 (-) 1272 WP_101148935.1 glucose-1-phosphate adenylyltransferase -
  U8518_RS05225 (U8518_05225) pilU 1124890..1126029 (-) 1140 WP_011706550.1 type IVa pilus ATPase TapW Machinery gene
  U8518_RS05230 (U8518_05230) - 1126090..1126446 (-) 357 WP_005302630.1 DMT family protein -
  U8518_RS05235 (U8518_05235) - 1126560..1127291 (+) 732 WP_101148934.1 substrate-binding periplasmic protein -
  U8518_RS05240 (U8518_05240) btuC 1127392..1128399 (+) 1008 WP_101148933.1 vitamin B12 ABC transporter permease BtuC -
  U8518_RS05245 (U8518_05245) - 1128386..1129171 (+) 786 WP_029300037.1 ATP-binding cassette domain-containing protein -
  U8518_RS05250 (U8518_05250) aac(6') 1129193..1129651 (-) 459 WP_101148932.1 aminoglycoside 6'-N-acetyltransferase -
  U8518_RS05255 (U8518_05255) - 1129658..1130722 (-) 1065 WP_101148931.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42264.32 Da        Isoelectric Point: 6.4290

>NTDB_id=916717 U8518_RS05225 WP_011706550.1 1124890..1126029(-) (pilU) [Aeromonas hydrophila strain MaAh001]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGGLRPLSETPLEPGEVARIADAIMDGEQKQQFERELEMNLAISLPQIGR
FRINIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHRKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTSDGGRRAAVEIMLGTHTIRDMIKRGEFGGLKEVMEKSKALGMVTFDSAL
FDLVVEGVIDEEEAVKNADSANNLRLKIKLWKEKGQIASSSDATGWSLEPTKDEKDDLF

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=916717 U8518_RS05225 WP_011706550.1 1124890..1126029(-) (pilU) [Aeromonas hydrophila strain MaAh001]
ATGGAATTGCGAGACATGCTACAGATCCTGGCCAAGCAGGATGGCTCCGACCTCTATCTGTCGACCGGCGCCCCCCCTTG
CGCCAAGTTCAACGGCGGCCTGCGTCCGCTCAGTGAAACACCGCTCGAGCCCGGCGAGGTGGCCAGAATAGCCGACGCCA
TCATGGACGGCGAGCAAAAGCAGCAGTTCGAGCGGGAGCTGGAGATGAACCTCGCCATCTCGCTGCCCCAGATCGGCCGC
TTTCGGATCAACATCTTCAAGCAGCGCAACGAAGTGTCGCTGGTGGCGCGCAACATCAAGACCGAGATCCCCCGCTTCGA
GGATCTGAAACTGCCCCCCGTACTGCTCGACACCATCATGGAGAAGCGCGGCCTGGTGCTGTTCGTCGGCGGTACCGGCT
CGGGCAAATCCACCTCGCTCGCGGCCCTCATCGACCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAAGAT
CCGGTGGAGTTCGTGCATCGCCACCGCAAGAGCATCATCAACCAGCGCGAGGTGGGGGTGGATACCCGCAGCTTCCACGC
TGCCCTGAAAAACACCCTGCGCCAGGCGCCGGACGTCATCCTCATCGGTGAAATTCGCGACCGCGAGACCATGGAACATG
CGCTGGCCTTCTCCGAGACCGGCCACCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGGAAGAGCGCCGACCCCAGCTGCTCAACGACCTTGGCAACAACCTCAAGGCCTTTGTCTCCCAGCG
GCTGGTCAAAACCAGCGACGGTGGCCGCCGGGCGGCGGTGGAGATCATGCTGGGCACCCACACCATTCGCGACATGATCA
AACGCGGCGAATTTGGCGGCCTCAAGGAGGTGATGGAGAAATCCAAGGCCCTCGGCATGGTCACCTTCGACAGCGCCCTG
TTCGATCTGGTGGTCGAGGGGGTGATCGACGAGGAGGAGGCGGTGAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GATCAAGCTGTGGAAGGAGAAGGGCCAGATCGCGAGCAGCAGCGATGCCACCGGCTGGAGCCTCGAGCCCACCAAAGACG
AAAAAGACGATCTGTTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.133

98.945

0.536
  pilU Acinetobacter baylyi ADP1

53.521

93.668

0.501
  pilU Vibrio cholerae strain A1552

50.286

92.348

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.076

93.14

0.383
  pilT Pseudomonas aeruginosa PAK

40.698

90.765

0.369
  pilT Legionella pneumophila strain ERS1305867

41.916

88.127

0.369
  pilT Legionella pneumophila strain Lp02

41.916

88.127

0.369
  pilT Pseudomonas stutzeri DSM 10701

40.116

90.765

0.364
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.441

87.863

0.364
  pilT Vibrio cholerae strain A1552

41.441

87.863

0.364
  pilT Acinetobacter baumannii D1279779

41.018

88.127

0.361
  pilT Acinetobacter baumannii strain A118

41.018

88.127

0.361
  pilT Acinetobacter nosocomialis M2

41.018

88.127

0.361