Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OCV30_RS12690 | Genome accession | NZ_AP025460 |
| Coordinates | 2862130..2862528 (+) | Length | 132 a.a. |
| NCBI ID | WP_065678066.1 | Uniprot ID | - |
| Organism | Vibrio atlanticus strain CECT 7223 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2857130..2867528
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV30_RS12675 | pdhR | 2859057..2859818 (-) | 762 | WP_009847596.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| OCV30_RS12680 | ampD | 2860301..2860901 (-) | 601 | Protein_2453 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| OCV30_RS12685 | nadC | 2860985..2861875 (+) | 891 | WP_017103843.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OCV30_RS12690 | pilA | 2862130..2862528 (+) | 399 | WP_065678066.1 | pilin | Machinery gene |
| OCV30_RS12695 | pilB | 2862529..2864214 (+) | 1686 | WP_065678065.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OCV30_RS12700 | pilC | 2864230..2865456 (+) | 1227 | WP_065678064.1 | type II secretion system F family protein | Machinery gene |
| OCV30_RS12705 | pilD | 2865525..2866394 (+) | 870 | WP_065678063.1 | prepilin peptidase | Machinery gene |
| OCV30_RS12710 | coaE | 2866397..2867011 (+) | 615 | WP_065678062.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 13431.40 Da Isoelectric Point: 9.9501
>NTDB_id=91649 OCV30_RS12690 WP_065678066.1 2862130..2862528(+) (pilA) [Vibrio atlanticus strain CECT 7223]
MKNKRKNQKGFTLIELMIVVAVIGVLAAIAIPQYQTYVKKGAAGAAYATATALKTNIEDYIAVNGTYPGTSAAVNATPFS
LGTVAVASNNVTVEVTSGGGRGSKVILSRDTTNGSWTCALTVSAGVSINGCS
MKNKRKNQKGFTLIELMIVVAVIGVLAAIAIPQYQTYVKKGAAGAAYATATALKTNIEDYIAVNGTYPGTSAAVNATPFS
LGTVAVASNNVTVEVTSGGGRGSKVILSRDTTNGSWTCALTVSAGVSINGCS
Nucleotide
Download Length: 399 bp
>NTDB_id=91649 OCV30_RS12690 WP_065678066.1 2862130..2862528(+) (pilA) [Vibrio atlanticus strain CECT 7223]
ATGAAAAACAAAAGAAAAAACCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTGGCTGTAATTGGGGTATTAGC
TGCTATTGCGATACCACAATATCAGACCTACGTAAAAAAAGGAGCAGCAGGCGCTGCATATGCAACAGCTACAGCACTTA
AAACAAATATTGAAGATTATATTGCTGTCAATGGTACTTACCCGGGAACTTCAGCAGCAGTTAATGCAACTCCATTCTCT
CTTGGAACTGTTGCCGTAGCATCTAATAACGTTACAGTTGAAGTAACATCAGGTGGTGGTCGTGGCTCTAAAGTCATCCT
ATCAAGAGATACTACAAATGGTTCGTGGACTTGCGCTTTAACCGTATCGGCTGGTGTTAGTATAAACGGTTGCTCATAG
ATGAAAAACAAAAGAAAAAACCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTAGTGGCTGTAATTGGGGTATTAGC
TGCTATTGCGATACCACAATATCAGACCTACGTAAAAAAAGGAGCAGCAGGCGCTGCATATGCAACAGCTACAGCACTTA
AAACAAATATTGAAGATTATATTGCTGTCAATGGTACTTACCCGGGAACTTCAGCAGCAGTTAATGCAACTCCATTCTCT
CTTGGAACTGTTGCCGTAGCATCTAATAACGTTACAGTTGAAGTAACATCAGGTGGTGGTCGTGGCTCTAAAGTCATCCT
ATCAAGAGATACTACAAATGGTTCGTGGACTTGCGCTTTAACCGTATCGGCTGGTGTTAGTATAAACGGTTGCTCATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
52.083 |
100 |
0.568 |
| pilA | Vibrio cholerae strain A1552 |
52.083 |
100 |
0.568 |
| pilA | Vibrio cholerae C6706 |
52.083 |
100 |
0.568 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.865 |
100 |
0.447 |
| pilA | Pseudomonas aeruginosa PAK |
38.514 |
100 |
0.432 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.462 |
100 |
0.417 |
| pilA | Acinetobacter baumannii strain A118 |
38.686 |
100 |
0.402 |
| pilA2 | Legionella pneumophila str. Paris |
40.833 |
90.909 |
0.371 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40 |
90.909 |
0.364 |
| pilE | Neisseria gonorrhoeae MS11 |
37.209 |
97.727 |
0.364 |