Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCV30_RS12700 Genome accession   NZ_AP025460
Coordinates   2864230..2865456 (+) Length   408 a.a.
NCBI ID   WP_065678064.1    Uniprot ID   A0A1C3IGP4
Organism   Vibrio atlanticus strain CECT 7223     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2859230..2870456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS12680 ampD 2860301..2860901 (-) 601 Protein_2453 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OCV30_RS12685 nadC 2860985..2861875 (+) 891 WP_017103843.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCV30_RS12690 pilA 2862130..2862528 (+) 399 WP_065678066.1 pilin Machinery gene
  OCV30_RS12695 pilB 2862529..2864214 (+) 1686 WP_065678065.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCV30_RS12700 pilC 2864230..2865456 (+) 1227 WP_065678064.1 type II secretion system F family protein Machinery gene
  OCV30_RS12705 pilD 2865525..2866394 (+) 870 WP_065678063.1 prepilin peptidase Machinery gene
  OCV30_RS12710 coaE 2866397..2867011 (+) 615 WP_065678062.1 dephospho-CoA kinase -
  OCV30_RS12715 zapD 2867038..2867778 (+) 741 WP_065678061.1 cell division protein ZapD -
  OCV30_RS12720 yacG 2868022..2868219 (+) 198 WP_065678060.1 DNA gyrase inhibitor YacG -
  OCV30_RS12725 rplS 2868547..2868900 (-) 354 WP_009847607.1 50S ribosomal protein L19 -
  OCV30_RS12730 trmD 2868960..2869700 (-) 741 WP_009847608.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OCV30_RS12735 rimM 2869727..2870281 (-) 555 WP_065678059.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45117.04 Da        Isoelectric Point: 10.0882

>NTDB_id=91651 OCV30_RS12700 WP_065678064.1 2864230..2865456(+) (pilC) [Vibrio atlanticus strain CECT 7223]
MSTKLQSQLKNYHWKGINSSGKKVSGQTLALAELEVREKLKEQHIQIKKIKKKSISAVTRLTHRVKAKDITILTRQLATM
LATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAMRTASTHFDDLYTDLVATGELSGNLAQVFERLATYRE
KSEQLKSKVIKALIYPTMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLSLSHWVQAYSLYAAVGIGLVTLF
TYQLRQRSYSIRLSFSRLGLRFPILGGVLAKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGNLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGTAIGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=91651 OCV30_RS12700 WP_065678064.1 2864230..2865456(+) (pilC) [Vibrio atlanticus strain CECT 7223]
ATGAGCACTAAACTGCAGTCACAATTAAAAAACTACCACTGGAAAGGCATAAACAGCTCAGGCAAAAAGGTGTCAGGGCA
AACCTTGGCACTCGCTGAATTAGAAGTACGAGAAAAGCTCAAAGAGCAGCATATTCAGATTAAGAAAATCAAAAAGAAAA
GTATCTCAGCAGTCACTCGTTTAACACATCGAGTCAAAGCCAAAGACATCACCATTTTGACTCGACAACTTGCGACCATG
CTTGCCACTGGCGTGCCTATCGTTCAGGCCATTAAGCTAGTGTCAGACAATCACCGTAAAGCTGAAATGAAATCAATTTT
ATTGCACATCTGTCGAGGTGTAGAAGCGGGAACCCCTATATCAAAAGCGATGCGGACGGCAAGCACTCACTTTGACGACC
TGTACACCGATTTGGTCGCTACGGGCGAGCTTTCCGGAAACCTAGCGCAAGTATTTGAACGCTTAGCAACCTATAGAGAA
AAGAGTGAGCAGCTAAAGTCTAAGGTCATAAAAGCACTGATTTACCCCACAATGGTGGTCGCTGTCGCTTTGACTGTCTC
TTACTTAATGCTCACCATGGTCATTCCTGAATTTGAATCGATGTTTTCAGGCTTCGGGGCAGACCTCCCTTGGTTTACTC
AACAAGTACTCTCCCTTTCGCATTGGGTACAGGCTTACAGTCTCTATGCTGCCGTTGGCATAGGGTTAGTCACATTATTT
ACCTACCAACTGCGTCAACGGTCTTATTCCATTCGTTTATCATTCAGCCGTCTAGGTTTGCGATTCCCTATTCTTGGCGG
AGTATTGGCCAAAGCCTCAATCGCCAAATTCAGCCGAACCTTATCAACCAGTTTTAGTTCAGGGATTCCTATTTTAACCA
GCCTGAAGACCACAGCCAAAACAGCAGGTAACTTGCATTATGAATCGGCCATCATCGAGGTTCATCGTGAAACTGCCGCT
GGCATGCCGATGTATATCGCGATGCGCAATACCGATGCCTTTCCTGAGATGGTTTTGCAGATGGTCATGATAGGAGAAGA
GTCCGGTAACCTTGATGACATGCTCAATAAAATCGCATCTATTTATGAATTTGAAGTCGACAACACCGTCGATAATTTAG
GTAAGATTCTAGAGCCACTGATCATCGTATTTTTAGGCACCGCTATTGGTGGACTTGTTGTCGCGATGTACTTACCGATC
TTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3IGP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.5

98.039

0.789
  pilC Vibrio campbellii strain DS40M4

74.69

98.775

0.738
  pilC Acinetobacter baumannii D1279779

40.777

100

0.412
  pilC Legionella pneumophila strain ERS1305867

41.895

98.284

0.412
  pilC Acinetobacter baylyi ADP1

40.686

100

0.407
  pilC Pseudomonas stutzeri DSM 10701

40.494

99.265

0.402
  pilG Neisseria gonorrhoeae MS11

40.1

97.794

0.392
  pilG Neisseria meningitidis 44/76-A

39.85

97.794

0.39

Multiple sequence alignment