Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   U1R67_RS18730 Genome accession   NZ_CP140118
Coordinates   3992447..3993583 (-) Length   378 a.a.
NCBI ID   WP_322131561.1    Uniprot ID   -
Organism   Aeromonas caviae strain A20-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3987447..3998583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R67_RS18705 (U1R67_18710) - 3988341..3988898 (-) 558 WP_010675206.1 TMEM165/GDT1 family protein -
  U1R67_RS18710 (U1R67_18715) - 3989152..3989481 (-) 330 WP_039041208.1 translation initiation factor -
  U1R67_RS18715 (U1R67_18720) - 3989601..3989828 (+) 228 WP_010675204.1 FeoA family protein -
  U1R67_RS18720 (U1R67_18725) feoB 3989825..3992095 (+) 2271 WP_111896890.1 Fe(2+) transporter permease subunit FeoB -
  U1R67_RS18725 (U1R67_18730) - 3992142..3992384 (+) 243 WP_039041210.1 FeoC-like transcriptional regulator -
  U1R67_RS18730 (U1R67_18735) pilU 3992447..3993583 (-) 1137 WP_322131561.1 type IVa pilus ATPase TapW Machinery gene
  U1R67_RS18735 (U1R67_18740) - 3993640..3993996 (-) 357 WP_010675200.1 DMT family protein -
  U1R67_RS18740 (U1R67_18745) - 3994109..3994840 (+) 732 WP_268453310.1 transporter substrate-binding domain-containing protein -
  U1R67_RS18745 (U1R67_18750) btuC 3994916..3995923 (+) 1008 WP_161470766.1 vitamin B12 ABC transporter permease BtuC -
  U1R67_RS18750 (U1R67_18755) - 3995910..3996683 (+) 774 WP_342041131.1 ATP-binding cassette domain-containing protein -
  U1R67_RS18755 (U1R67_18760) - 3996890..3997954 (-) 1065 WP_042014687.1 3-deoxy-7-phosphoheptulonate synthase -
  U1R67_RS18760 (U1R67_18765) - 3998096..3998476 (+) 381 WP_039040385.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42175.25 Da        Isoelectric Point: 6.6000

>NTDB_id=912886 U1R67_RS18730 WP_322131561.1 3992447..3993583(-) (pilU) [Aeromonas caviae strain A20-9]
MELRDMLQILAKQDGSDLYLSTGAPPCAKFNGALRPLTQEPLGPGEVARIAYDIMDLEQKQQFEKELEMNLAISLPQIGR
FRVNIFKQRNEVSLVARNIKTEIPRFEDLKLPPVLLDTIMEKRGLVLFVGGTGSGKSTSLAALIDHRNRNSGGHIITIED
PVEFVHRHQKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFSETGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVKTTDGGRRAAVEVMLGTHTVRDLIKRGEFGGLKEIMEKSKALGMVTFDSTL
FDLVVEGVIDEEEAVKNADSQNNLRLKIKLWREKGQIGNSAAASGWSLEPTKDEGDLF

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=912886 U1R67_RS18730 WP_322131561.1 3992447..3993583(-) (pilU) [Aeromonas caviae strain A20-9]
ATGGAATTGAGAGACATGCTGCAGATCCTGGCCAAACAGGACGGTTCCGATCTCTATCTCTCCACCGGCGCCCCCCCCTG
CGCCAAGTTCAACGGCGCCCTGCGCCCCCTCACCCAGGAGCCCCTGGGGCCGGGCGAGGTGGCCCGCATCGCCTACGACA
TCATGGATCTCGAGCAGAAACAGCAGTTCGAGAAAGAGCTGGAGATGAACCTCGCCATCTCCCTGCCCCAGATAGGCCGT
TTTCGGGTCAACATCTTCAAGCAGCGCAATGAAGTTTCCCTGGTGGCGCGCAACATCAAGACCGAGATCCCCCGCTTCGA
GGATCTCAAACTCCCTCCGGTGCTCCTCGACACCATCATGGAGAAGCGGGGTCTGGTGCTCTTCGTCGGCGGCACGGGGT
CCGGCAAGTCCACGTCGCTCGCGGCCCTCATCGATCATCGCAACCGCAACAGCGGCGGCCACATCATCACCATCGAGGAT
CCGGTGGAGTTCGTCCATCGCCACCAGAAGAGCATCATCAACCAGCGGGAGGTGGGGGTGGATACCCGCAGCTTCCACGC
GGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTCATCCTCATCGGTGAAATCCGCGATCGGGAGACCATGGAGCATG
CCCTCGCCTTCTCGGAGACCGGGCATCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGATCGCATC
ATCAACTTCTTCCCGGAAGAGCGCAGACCCCAGCTGCTCAACGACCTTGGCAACAACCTCAAGGCCTTTGTCTCCCAGCG
GCTGGTGAAGACCACAGATGGCGGCCGCCGGGCGGCGGTGGAGGTGATGCTCGGAACCCACACGGTGCGCGATCTCATCA
AGCGCGGCGAGTTTGGCGGCCTCAAGGAGATCATGGAAAAATCCAAGGCCCTTGGCATGGTGACCTTCGACAGCACTCTG
TTCGATCTGGTGGTCGAGGGGGTGATCGACGAGGAGGAGGCGGTGAAGAACGCAGACTCCCAGAACAACCTGCGCCTCAA
GATCAAACTCTGGCGGGAGAAGGGCCAGATTGGCAACAGCGCGGCAGCGAGCGGCTGGAGCCTGGAGCCCACCAAGGACG
AGGGCGACCTCTTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(114-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

54.4

99.206

0.54
  pilU Acinetobacter baylyi ADP1

52.514

94.709

0.497
  pilU Vibrio cholerae strain A1552

49.858

93.386

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.478

89.683

0.381
  pilT Vibrio cholerae strain A1552

40.456

92.857

0.376
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

40.456

92.857

0.376
  pilT Legionella pneumophila strain ERS1305867

42.216

88.36

0.373
  pilT Legionella pneumophila strain Lp02

42.216

88.36

0.373
  pilT Pseudomonas aeruginosa PAK

40.988

91.005

0.373
  pilT Pseudomonas stutzeri DSM 10701

40.698

91.005

0.37
  pilT Acinetobacter baumannii strain A118

41.317

88.36

0.365
  pilT Acinetobacter nosocomialis M2

41.317

88.36

0.365
  pilT Acinetobacter baumannii D1279779

41.317

88.36

0.365