Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   RYQ61_RS02635 Genome accession   NZ_CP136799
Coordinates   519451..520392 (-) Length   313 a.a.
NCBI ID   WP_102568325.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514451..525392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS02595 (RYQ61_02595) - 514502..515701 (-) 1200 WP_021003254.1 acetate kinase -
  RYQ61_RS02600 (RYQ61_02600) comYH 515748..516701 (-) 954 WP_102568323.1 class I SAM-dependent methyltransferase Machinery gene
  RYQ61_RS02605 (RYQ61_02605) comGG 516792..517118 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG -
  RYQ61_RS02610 (RYQ61_02610) comGF/cglF 517099..517536 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  RYQ61_RS02615 (RYQ61_02615) comGE/cglE 517520..517813 (-) 294 WP_048785663.1 competence type IV pilus minor pilin ComGE Machinery gene
  RYQ61_RS02620 (RYQ61_02620) comYD 517785..518213 (-) 429 WP_037582814.1 competence type IV pilus minor pilin ComGD Machinery gene
  RYQ61_RS02625 (RYQ61_02625) comYC 518173..518490 (-) 318 WP_003073983.1 competence type IV pilus major pilin ComGC Machinery gene
  RYQ61_RS02630 (RYQ61_02630) comYB 518487..519509 (-) 1023 WP_172964131.1 competence type IV pilus assembly protein ComGB Machinery gene
  RYQ61_RS02635 (RYQ61_02635) comYA 519451..520392 (-) 942 WP_102568325.1 competence type IV pilus ATPase ComGA Machinery gene
  RYQ61_RS02640 (RYQ61_02640) - 520461..520826 (-) 366 WP_048785667.1 DUF1033 family protein -
  RYQ61_RS02645 (RYQ61_02645) glnA 521048..522394 (-) 1347 WP_021003260.1 type I glutamate--ammonia ligase -
  RYQ61_RS02650 (RYQ61_02650) - 522433..522792 (-) 360 WP_102568326.1 MerR family transcriptional regulator -
  RYQ61_RS02655 (RYQ61_02655) - 522869..523399 (-) 531 WP_003073971.1 aromatic acid exporter family protein -
  RYQ61_RS02660 (RYQ61_02660) - 523574..524254 (-) 681 WP_003075761.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36034.39 Da        Isoelectric Point: 7.8529

>NTDB_id=892710 RYQ61_RS02635 WP_102568325.1 519451..520392(-) (comYA) [Streptococcus intermedius strain XH2169]
MVQNIAQDIICQAKEKQAQDIYFIPKENSYELYMRIGDERRFIQQYAFEKMAAVISHFKFTAGMNVGEKRRSQLGSCDYQ
YRDKKTSLRLSTVGDYRGYESLVIRLLHDEKAELKFWFAQIPELKGRLKQRGLYLFSGPVGSGKTTLMHQLAQERFADEQ
IMSIEDPVEIKQDRMLQLQLNEAIGLTYESLIKLSLRHRPDLLIIGEIRDTETARAVVRASLTGVTVFSTIHAKSVRGVY
ERLLELGVTDAELKIVLQGICYQRLIAKGGIVDFVSERYQEHDPSEWNRQIDQLYAAGHINLEQAKAEKIIHS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=892710 RYQ61_RS02635 WP_102568325.1 519451..520392(-) (comYA) [Streptococcus intermedius strain XH2169]
ATGGTTCAAAACATTGCACAAGATATTATTTGCCAAGCTAAGGAAAAACAGGCTCAAGATATTTATTTTATCCCAAAGGA
AAATAGTTATGAACTGTACATGAGAATTGGTGATGAGCGACGTTTTATACAACAGTATGCATTTGAAAAGATGGCAGCGG
TGATTAGTCATTTCAAATTTACTGCTGGGATGAATGTTGGTGAAAAACGTAGAAGCCAACTAGGGTCTTGTGATTATCAA
TACAGGGATAAGAAAACATCACTGCGGTTGTCAACAGTAGGGGATTATCGCGGATATGAAAGTCTTGTGATTCGTTTATT
GCATGATGAAAAAGCAGAGTTGAAGTTTTGGTTTGCTCAAATTCCAGAGTTGAAAGGACGACTCAAGCAACGTGGACTTT
ATCTTTTTTCAGGACCGGTAGGGAGTGGCAAAACCACTCTTATGCATCAGCTGGCTCAAGAACGTTTTGCCGATGAGCAA
ATCATGTCTATCGAAGATCCTGTTGAAATTAAGCAAGACAGAATGTTGCAATTGCAATTGAATGAAGCGATTGGCTTAAC
TTATGAAAGTTTGATTAAACTTTCTCTTCGACATCGTCCAGATTTATTGATTATTGGAGAAATTCGAGATACAGAAACAG
CACGGGCGGTTGTACGAGCCAGCTTGACAGGAGTGACGGTCTTTTCAACGATTCATGCTAAAAGTGTGCGAGGCGTTTAT
GAACGATTGCTAGAGTTGGGAGTGACAGACGCAGAGCTGAAAATTGTCTTGCAAGGTATTTGTTACCAACGTCTAATTGC
GAAAGGAGGAATAGTAGATTTTGTCAGTGAAAGGTATCAAGAACACGATCCAAGCGAATGGAATAGGCAAATTGATCAAC
TTTATGCAGCAGGACATATCAATCTTGAACAGGCAAAAGCGGAAAAAATTATCCACAGTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

80.323

99.042

0.796
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

74.76

100

0.748
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

74.441

100

0.744
  comGA/cglA/cilD Streptococcus pneumoniae D39

74.441

100

0.744
  comGA/cglA/cilD Streptococcus pneumoniae R6

74.441

100

0.744
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

74.441

100

0.744
  comYA Streptococcus mutans UA159

65.595

99.361

0.652
  comYA Streptococcus mutans UA140

65.595

99.361

0.652
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

63.226

99.042

0.626
  comGA Lactococcus lactis subsp. cremoris KW2

54.662

99.361

0.543
  comGA Latilactobacillus sakei subsp. sakei 23K

43.295

83.387

0.361