Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   RYQ61_RS02630 Genome accession   NZ_CP136799
Coordinates   518487..519509 (-) Length   340 a.a.
NCBI ID   WP_172964131.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513487..524509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS02595 (RYQ61_02595) - 514502..515701 (-) 1200 WP_021003254.1 acetate kinase -
  RYQ61_RS02600 (RYQ61_02600) comYH 515748..516701 (-) 954 WP_102568323.1 class I SAM-dependent methyltransferase Machinery gene
  RYQ61_RS02605 (RYQ61_02605) comGG 516792..517118 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG -
  RYQ61_RS02610 (RYQ61_02610) comGF/cglF 517099..517536 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  RYQ61_RS02615 (RYQ61_02615) comGE/cglE 517520..517813 (-) 294 WP_048785663.1 competence type IV pilus minor pilin ComGE Machinery gene
  RYQ61_RS02620 (RYQ61_02620) comYD 517785..518213 (-) 429 WP_037582814.1 competence type IV pilus minor pilin ComGD Machinery gene
  RYQ61_RS02625 (RYQ61_02625) comYC 518173..518490 (-) 318 WP_003073983.1 competence type IV pilus major pilin ComGC Machinery gene
  RYQ61_RS02630 (RYQ61_02630) comYB 518487..519509 (-) 1023 WP_172964131.1 competence type IV pilus assembly protein ComGB Machinery gene
  RYQ61_RS02635 (RYQ61_02635) comYA 519451..520392 (-) 942 WP_102568325.1 competence type IV pilus ATPase ComGA Machinery gene
  RYQ61_RS02640 (RYQ61_02640) - 520461..520826 (-) 366 WP_048785667.1 DUF1033 family protein -
  RYQ61_RS02645 (RYQ61_02645) glnA 521048..522394 (-) 1347 WP_021003260.1 type I glutamate--ammonia ligase -
  RYQ61_RS02650 (RYQ61_02650) - 522433..522792 (-) 360 WP_102568326.1 MerR family transcriptional regulator -
  RYQ61_RS02655 (RYQ61_02655) - 522869..523399 (-) 531 WP_003073971.1 aromatic acid exporter family protein -
  RYQ61_RS02660 (RYQ61_02660) - 523574..524254 (-) 681 WP_003075761.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39157.31 Da        Isoelectric Point: 9.7483

>NTDB_id=892709 RYQ61_RS02630 WP_172964131.1 518487..519509(-) (comYB) [Streptococcus intermedius strain XH2169]
MQQDISILNRQKRKKLSTVKQKKVVELLNNLFSSGFHLAEIIDFLKRSALLEKAYVEKMKEGLATGKPFSDIMASLGFSD
NVVTQLSLAELHGNLSLSLSKIEEYLENISKVKKKLIEVATYPFILFIFLVFIMLGLRNYLLPQLESQNIATQLISRLPQ
IFLGSVGVVFALFAIGFYWFRKSSQIRVFSLLSRLPFWGTFVQTYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEVALQNGQEFSQVVKHYPFFKKELGLMIEYGEVKSKLGCELEVYAQKTWEVFFKRVHQAMNIIQPLVFVFVALM
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=892709 RYQ61_RS02630 WP_172964131.1 518487..519509(-) (comYB) [Streptococcus intermedius strain XH2169]
ATGCAGCAGGACATATCAATCTTGAACAGGCAAAAGCGGAAAAAATTATCCACAGTTAAGCAGAAAAAAGTCGTAGAGTT
ACTAAATAATCTTTTTTCTAGTGGTTTTCACTTGGCAGAAATTATTGATTTTTTGAAACGGAGTGCTTTGTTAGAAAAAG
CCTATGTGGAAAAGATGAAAGAGGGTTTGGCAACTGGAAAGCCTTTTTCAGACATCATGGCAAGTTTAGGTTTTTCGGAT
AATGTAGTAACACAGCTTTCATTGGCAGAATTGCATGGAAATTTATCGCTCAGTTTGAGTAAAATTGAAGAGTATTTGGA
AAATATCTCAAAAGTCAAGAAAAAGTTAATCGAAGTGGCGACTTATCCATTTATTTTATTCATTTTTCTAGTGTTTATTA
TGTTAGGATTGCGCAATTATTTGTTACCGCAGTTGGAGAGTCAGAATATTGCAACACAACTGATTAGTCGTTTACCACAA
ATTTTTCTGGGTTCAGTAGGAGTTGTTTTTGCTTTGTTTGCGATCGGTTTTTATTGGTTTAGAAAAAGCTCACAAATAAG
AGTATTTAGTTTGTTGTCTCGCCTTCCTTTTTGGGGCACTTTTGTTCAAACCTATTTGACAGCTTATTATGCGAGAGAAT
GGGGGAATATGATTGGTCAAGGCTTAGAACTCAGTCAGATTTTCCAGATGATGCAAGGACAGCGCTCTGCTATGTTTCAA
GAAATTGGAAAAGATTTAGAAGTAGCACTGCAAAATGGTCAGGAATTTTCACAAGTAGTTAAGCATTATCCATTTTTTAA
AAAAGAATTGGGCTTGATGATTGAATATGGGGAAGTGAAGTCCAAATTGGGGTGCGAATTAGAAGTTTATGCTCAAAAAA
CATGGGAGGTATTTTTTAAACGTGTTCATCAAGCGATGAATATCATTCAGCCATTAGTATTTGTCTTTGTGGCGTTAATG
ATTGTATTGTTGTATGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

73.529

100

0.735
  comGB/cglB Streptococcus mitis SK321

69.254

98.529

0.682
  comGB/cglB Streptococcus mitis NCTC 12261

69.254

98.529

0.682
  comGB/cglB Streptococcus pneumoniae Rx1

68.358

98.529

0.674
  comGB/cglB Streptococcus pneumoniae D39

68.358

98.529

0.674
  comGB/cglB Streptococcus pneumoniae R6

68.358

98.529

0.674
  comGB/cglB Streptococcus pneumoniae TIGR4

68.358

98.529

0.674
  comYB Streptococcus mutans UA140

60.819

100

0.612
  comYB Streptococcus mutans UA159

60.819

100

0.612
  comGB Lactococcus lactis subsp. cremoris KW2

51.929

99.118

0.515