Detailed information NTG0892704

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: RYQ61_RS02600
• Genome accession: NZ_CP136799
• Coordinates: 515748..516701 (-)
• Length: 317 a.a.
• NCBI ID: WP_102568323.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain XH2169
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 510748..521701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RYQ61_RS02590 (RYQ61_02590)	glmS	512298..514112 (-)	1815	WP_021003253.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
RYQ61_RS02595 (RYQ61_02595)	-	514502..515701 (-)	1200	WP_021003254.1	acetate kinase	-
RYQ61_RS02600 (RYQ61_02600)	comYH	515748..516701 (-)	954	WP_102568323.1	class I SAM-dependent methyltransferase	Machinery gene
RYQ61_RS02605 (RYQ61_02605)	comGG	516792..517118 (-)	327	WP_020999196.1	competence type IV pilus minor pilin ComGG	-
RYQ61_RS02610 (RYQ61_02610)	comGF/cglF	517099..517536 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
RYQ61_RS02615 (RYQ61_02615)	comGE/cglE	517520..517813 (-)	294	WP_048785663.1	competence type IV pilus minor pilin ComGE	Machinery gene
RYQ61_RS02620 (RYQ61_02620)	comYD	517785..518213 (-)	429	WP_037582814.1	competence type IV pilus minor pilin ComGD	Machinery gene
RYQ61_RS02625 (RYQ61_02625)	comYC	518173..518490 (-)	318	WP_003073983.1	competence type IV pilus major pilin ComGC	Machinery gene
RYQ61_RS02630 (RYQ61_02630)	comYB	518487..519509 (-)	1023	WP_172964131.1	competence type IV pilus assembly protein ComGB	Machinery gene
RYQ61_RS02635 (RYQ61_02635)	comYA	519451..520392 (-)	942	WP_102568325.1	competence type IV pilus ATPase ComGA	Machinery gene
RYQ61_RS02640 (RYQ61_02640)	-	520461..520826 (-)	366	WP_048785667.1	DUF1033 family protein	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 36013.01 Da
• Isoelectric Point: 4.5230

>NTDB_id=892704 RYQ61_RS02600 WP_102568323.1 515748..516701(-) (comYH) [Streptococcus intermedius strain XH2169]
MNFEKIEQAYTLLLENIQEIQNDLLTNFYDALVEQNGICLDGKTELATVKKNNEILNSLKLSKEEWRRSYQFLLMKAAQT
EPLQANHQFTPDSIGFIVTFLIDQLSNKEHIDVLEIGSGMGNLAETILNNTKKNVDYLGLELDDLLIDVSASIADVMDAR
VSFVQGDAVRPQVLKESDVIVSDLPIGYYPDDHIASRYEVASTQEHTYAHHLLMEQSLKYLKPGGYAIFLAPNNLLTSRQ
SQLLKNWLQKYVQIVAMIALPESLFGNAAYAKTIFVLKKQDEQAIQPFVYALTDLQNQAALLTFSEKFQNWRQESEI

Nucleotide

• Length: 954 bp

>NTDB_id=892704 RYQ61_RS02600 WP_102568323.1 515748..516701(-) (comYH) [Streptococcus intermedius strain XH2169]
ATGAATTTTGAAAAAATTGAACAGGCCTATACGCTCCTGTTAGAAAATATCCAAGAAATCCAAAATGATCTTTTAACGAA
TTTTTATGATGCCTTGGTAGAGCAAAACGGGATTTGTCTGGATGGAAAGACAGAGCTAGCCACTGTCAAAAAAAATAATG
AAATACTAAACTCTTTGAAATTAAGTAAAGAAGAATGGCGCAGGAGCTACCAATTTTTACTGATGAAAGCGGCTCAAACG
GAGCCTTTGCAAGCCAATCATCAATTTACTCCGGATTCTATTGGTTTTATCGTAACATTTCTCATTGACCAGTTGAGTAA
TAAAGAACATATTGATGTTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCAGAGACCATTCTCAATAATACAAAGAAAA
ATGTGGATTACCTAGGACTAGAATTGGACGATTTGTTAATTGATGTATCAGCTAGCATAGCAGATGTGATGGATGCAAGG
GTTAGTTTTGTACAGGGTGATGCAGTGCGCCCACAAGTATTAAAAGAAAGTGATGTGATTGTTAGCGATTTGCCGATTGG
CTATTATCCGGATGATCACATTGCATCGCGCTATGAAGTGGCTAGTACGCAAGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTGAAACCAGGCGGTTATGCGATATTTCTTGCGCCAAATAATTTATTAACTAGTAGGCAG
AGTCAATTATTGAAAAATTGGTTGCAAAAGTATGTTCAGATAGTTGCAATGATTGCGTTGCCGGAATCCCTTTTTGGAAA
TGCAGCGTATGCCAAAACAATTTTTGTGCTCAAAAAGCAAGACGAACAAGCTATTCAGCCATTTGTTTATGCTTTGACTG
ATTTACAAAATCAAGCTGCCTTATTGACTTTTAGCGAAAAATTCCAAAATTGGAGGCAAGAAAGTGAAATTTAA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (69-283)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	60.317	99.369	0.599
comYH	Streptococcus mutans UA159	60	99.369	0.596