Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   RYQ61_RS02615 Genome accession   NZ_CP136799
Coordinates   517520..517813 (-) Length   97 a.a.
NCBI ID   WP_048785663.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512520..522813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS02595 (RYQ61_02595) - 514502..515701 (-) 1200 WP_021003254.1 acetate kinase -
  RYQ61_RS02600 (RYQ61_02600) comYH 515748..516701 (-) 954 WP_102568323.1 class I SAM-dependent methyltransferase Machinery gene
  RYQ61_RS02605 (RYQ61_02605) comGG 516792..517118 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG -
  RYQ61_RS02610 (RYQ61_02610) comGF/cglF 517099..517536 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  RYQ61_RS02615 (RYQ61_02615) comGE/cglE 517520..517813 (-) 294 WP_048785663.1 competence type IV pilus minor pilin ComGE Machinery gene
  RYQ61_RS02620 (RYQ61_02620) comYD 517785..518213 (-) 429 WP_037582814.1 competence type IV pilus minor pilin ComGD Machinery gene
  RYQ61_RS02625 (RYQ61_02625) comYC 518173..518490 (-) 318 WP_003073983.1 competence type IV pilus major pilin ComGC Machinery gene
  RYQ61_RS02630 (RYQ61_02630) comYB 518487..519509 (-) 1023 WP_172964131.1 competence type IV pilus assembly protein ComGB Machinery gene
  RYQ61_RS02635 (RYQ61_02635) comYA 519451..520392 (-) 942 WP_102568325.1 competence type IV pilus ATPase ComGA Machinery gene
  RYQ61_RS02640 (RYQ61_02640) - 520461..520826 (-) 366 WP_048785667.1 DUF1033 family protein -
  RYQ61_RS02645 (RYQ61_02645) glnA 521048..522394 (-) 1347 WP_021003260.1 type I glutamate--ammonia ligase -
  RYQ61_RS02650 (RYQ61_02650) - 522433..522792 (-) 360 WP_102568326.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11137.20 Da        Isoelectric Point: 10.6549

>NTDB_id=892706 RYQ61_RS02615 WP_048785663.1 517520..517813(-) (comGE/cglE) [Streptococcus intermedius strain XH2169]
MENLRKQYVRGTILLEALLALAIFATIVTLLLGQIHQSRKLENELLKKEEVLRVAKMALQTNQRHLTMNGIEVRVEKSQQ
GIRVYHGKELIFGVQSK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=892706 RYQ61_RS02615 WP_048785663.1 517520..517813(-) (comGE/cglE) [Streptococcus intermedius strain XH2169]
ATGGAAAATTTAAGAAAACAATATGTTAGAGGGACAATTTTATTAGAAGCACTGCTTGCGTTAGCTATTTTTGCGACAAT
TGTAACTCTGTTGTTGGGACAAATTCACCAGTCTCGAAAACTAGAAAATGAGTTATTAAAAAAAGAAGAAGTCTTAAGGG
TAGCGAAGATGGCCTTGCAAACAAATCAAAGGCATTTAACAATGAACGGTATTGAAGTACGTGTCGAAAAAAGCCAACAA
GGTATTCGGGTTTATCATGGGAAGGAGCTGATTTTTGGTGTTCAAAGCAAATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

57.609

94.845

0.546
  comGE/cglE Streptococcus pneumoniae D39

57.609

94.845

0.546
  comGE/cglE Streptococcus pneumoniae R6

57.609

94.845

0.546
  comGE/cglE Streptococcus pneumoniae TIGR4

57.609

94.845

0.546
  comGE/cglE Streptococcus mitis NCTC 12261

56.522

94.845

0.536
  comGE/cglE Streptococcus mitis SK321

56.522

94.845

0.536
  comYE Streptococcus mutans UA140

48.352

93.814

0.454
  comYE Streptococcus mutans UA159

48.352

93.814

0.454