Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | OCV04_RS10055 | Genome accession | NZ_AP024893 |
| Coordinates | 2159582..2159839 (-) | Length | 85 a.a. |
| NCBI ID | WP_240956669.1 | Uniprot ID | - |
| Organism | Vibrio plantisponsor strain CECT 7581 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2154582..2164839
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV04_RS10030 | lapB | 2154697..2155866 (-) | 1170 | WP_171137560.1 | lipopolysaccharide assembly protein LapB | - |
| OCV04_RS10035 | - | 2155879..2156166 (-) | 288 | WP_042486796.1 | LapA family protein | - |
| OCV04_RS10040 | ihfB | 2156296..2156574 (-) | 279 | WP_042486798.1 | integration host factor subunit beta | - |
| OCV04_RS10045 | rpsA | 2156883..2158553 (-) | 1671 | WP_102940685.1 | 30S ribosomal protein S1 | - |
| OCV04_RS10050 | cmk | 2158659..2159339 (-) | 681 | WP_042486803.1 | (d)CMP kinase | - |
| OCV04_RS10055 | comEA | 2159582..2159839 (-) | 258 | WP_240956669.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| OCV04_RS10060 | ppiD | 2160042..2161901 (-) | 1860 | WP_171137562.1 | peptidylprolyl isomerase | - |
| OCV04_RS10065 | - | 2162056..2162328 (-) | 273 | WP_042486811.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 85 a.a. Molecular weight: 8917.14 Da Isoelectric Point: 9.7290
>NTDB_id=89215 OCV04_RS10055 WP_240956669.1 2159582..2159839(-) (comEA) [Vibrio plantisponsor strain CECT 7581]
MTSVSAADSSTNQTVKTDGIVITVNVNTASAEEISTLLKGVGLKKAQAIVEYRGQHGPFASKDDLTKVKGIGASTVKKNE
DRILL
MTSVSAADSSTNQTVKTDGIVITVNVNTASAEEISTLLKGVGLKKAQAIVEYRGQHGPFASKDDLTKVKGIGASTVKKNE
DRILL
Nucleotide
Download Length: 258 bp
>NTDB_id=89215 OCV04_RS10055 WP_240956669.1 2159582..2159839(-) (comEA) [Vibrio plantisponsor strain CECT 7581]
ATGACGAGTGTGTCCGCAGCTGATAGCAGTACCAATCAGACAGTGAAAACAGATGGTATTGTGATAACGGTGAATGTGAA
TACCGCTTCAGCCGAAGAAATATCCACTTTACTAAAAGGTGTTGGACTTAAAAAAGCGCAAGCGATTGTTGAATATCGTG
GCCAGCATGGGCCATTCGCATCTAAAGATGATCTTACTAAGGTAAAAGGTATTGGTGCCTCAACAGTAAAGAAAAACGAA
GACCGAATTCTTCTGTAA
ATGACGAGTGTGTCCGCAGCTGATAGCAGTACCAATCAGACAGTGAAAACAGATGGTATTGTGATAACGGTGAATGTGAA
TACCGCTTCAGCCGAAGAAATATCCACTTTACTAAAAGGTGTTGGACTTAAAAAAGCGCAAGCGATTGTTGAATATCGTG
GCCAGCATGGGCCATTCGCATCTAAAGATGATCTTACTAAGGTAAAAGGTATTGGTGCCTCAACAGTAAAGAAAAACGAA
GACCGAATTCTTCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
62.353 |
100 |
0.624 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
66.25 |
94.118 |
0.624 |
| comEA | Vibrio cholerae C6706 |
72.059 |
80 |
0.576 |
| comEA | Vibrio cholerae strain A1552 |
72.059 |
80 |
0.576 |
| comEA | Acinetobacter baylyi ADP1 |
51.899 |
92.941 |
0.482 |
| comEA | Staphylococcus aureus MW2 |
46.154 |
91.765 |
0.424 |
| comEA | Staphylococcus aureus N315 |
46.154 |
91.765 |
0.424 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
54.839 |
72.941 |
0.4 |
| comEA/celA/cilE | Streptococcus mitis SK321 |
43.038 |
92.941 |
0.4 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
42.667 |
88.235 |
0.376 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
51.613 |
72.941 |
0.376 |
| comEA | Latilactobacillus sakei subsp. sakei 23K |
38.095 |
98.824 |
0.376 |
| comE | Neisseria gonorrhoeae MS11 |
51.667 |
70.588 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
51.667 |
70.588 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
51.667 |
70.588 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
51.667 |
70.588 |
0.365 |