Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | Q9R16_RS04070 | Genome accession | NZ_CP133989 |
| Coordinates | 893921..894349 (-) | Length | 142 a.a. |
| NCBI ID | WP_053495122.1 | Uniprot ID | - |
| Organism | Stenotrophomonas sp. 9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 888921..899349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9R16_RS04055 (Q9R16_04055) | pilR | 889980..891353 (+) | 1374 | WP_014648199.1 | sigma-54 dependent transcriptional regulator | Regulator |
| Q9R16_RS04060 (Q9R16_04060) | pilB | 891466..893196 (-) | 1731 | WP_014648200.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Q9R16_RS04065 (Q9R16_04065) | - | 893421..893828 (-) | 408 | WP_053495123.1 | pilin | - |
| Q9R16_RS04070 (Q9R16_04070) | pilA | 893921..894349 (-) | 429 | WP_053495122.1 | pilin | Machinery gene |
| Q9R16_RS04075 (Q9R16_04075) | pilC | 894704..895963 (+) | 1260 | WP_053495121.1 | type II secretion system F family protein | Machinery gene |
| Q9R16_RS04080 (Q9R16_04080) | - | 895972..896835 (+) | 864 | WP_005418626.1 | A24 family peptidase | - |
| Q9R16_RS04085 (Q9R16_04085) | coaE | 896847..897458 (+) | 612 | WP_053495120.1 | dephospho-CoA kinase | - |
| Q9R16_RS04090 (Q9R16_04090) | - | 898434..898748 (-) | 315 | WP_258014725.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14860.98 Da Isoelectric Point: 8.4668
>NTDB_id=878194 Q9R16_RS04070 WP_053495122.1 893921..894349(-) (pilA) [Stenotrophomonas sp. 9]
MKNQKGFTLIELMIVVAIIAILAAIALPQYQNYVAKSQFTAGLAEVSAGKTAYETKVNDGVTDGTQYTTVSNLGLKDSDR
CALTATAPDNTGAGSIVCTLKGNPKVATKKITLERDANGNWSCKSDLAAADKPKYAPATCQG
MKNQKGFTLIELMIVVAIIAILAAIALPQYQNYVAKSQFTAGLAEVSAGKTAYETKVNDGVTDGTQYTTVSNLGLKDSDR
CALTATAPDNTGAGSIVCTLKGNPKVATKKITLERDANGNWSCKSDLAAADKPKYAPATCQG
Nucleotide
Download Length: 429 bp
>NTDB_id=878194 Q9R16_RS04070 WP_053495122.1 893921..894349(-) (pilA) [Stenotrophomonas sp. 9]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTCGTTGCGATCATTGCAATCCTGGCTGCCATCGCCCT
GCCGCAGTACCAGAACTACGTAGCCAAGTCGCAGTTCACGGCAGGCCTCGCCGAAGTTTCGGCCGGCAAGACTGCCTACG
AAACCAAGGTGAATGACGGTGTCACTGACGGCACGCAGTACACCACTGTATCGAACCTGGGCCTGAAGGATAGCGATCGT
TGCGCGCTCACCGCGACCGCTCCGGATAACACCGGCGCTGGTTCGATTGTGTGCACCTTGAAGGGTAACCCGAAGGTTGC
CACCAAGAAGATCACCTTGGAGCGTGACGCCAACGGCAACTGGAGCTGCAAGTCCGATCTGGCTGCTGCCGACAAGCCGA
AGTATGCTCCGGCTACCTGCCAGGGCTGA
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTCGTTGCGATCATTGCAATCCTGGCTGCCATCGCCCT
GCCGCAGTACCAGAACTACGTAGCCAAGTCGCAGTTCACGGCAGGCCTCGCCGAAGTTTCGGCCGGCAAGACTGCCTACG
AAACCAAGGTGAATGACGGTGTCACTGACGGCACGCAGTACACCACTGTATCGAACCTGGGCCTGAAGGATAGCGATCGT
TGCGCGCTCACCGCGACCGCTCCGGATAACACCGGCGCTGGTTCGATTGTGTGCACCTTGAAGGGTAACCCGAAGGTTGC
CACCAAGAAGATCACCTTGGAGCGTGACGCCAACGGCAACTGGAGCTGCAAGTCCGATCTGGCTGCTGCCGACAAGCCGA
AGTATGCTCCGGCTACCTGCCAGGGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
52.899 |
97.183 |
0.514 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
48.571 |
98.592 |
0.479 |
| pilA | Pseudomonas aeruginosa PAK |
46.377 |
97.183 |
0.451 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.604 |
97.887 |
0.437 |
| pilA | Vibrio cholerae strain A1552 |
44.604 |
97.887 |
0.437 |
| pilA | Vibrio cholerae C6706 |
44.604 |
97.887 |
0.437 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.697 |
92.958 |
0.415 |
| comP | Acinetobacter baylyi ADP1 |
37.908 |
100 |
0.408 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
34.783 |
100 |
0.394 |
| pilA2 | Legionella pneumophila str. Paris |
36.667 |
100 |
0.387 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
36 |
100 |
0.38 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.063 |
88.732 |
0.373 |