Detailed information NTG0878192

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: Q9R16_RS04055
• Genome accession: NZ_CP133989
• Coordinates: 889980..891353 (+)
• Length: 457 a.a.
• NCBI ID: WP_014648199.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. 9
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 884980..896353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9R16_RS04040 (Q9R16_04040)	sucD	885835..886710 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
Q9R16_RS04045 (Q9R16_04045)	sucC	886731..887900 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
Q9R16_RS04050 (Q9R16_04050)	-	888306..889919 (+)	1614	WP_014648198.1	ATP-binding protein	-
Q9R16_RS04055 (Q9R16_04055)	pilR	889980..891353 (+)	1374	WP_014648199.1	sigma-54 dependent transcriptional regulator	Regulator
Q9R16_RS04060 (Q9R16_04060)	pilB	891466..893196 (-)	1731	WP_014648200.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q9R16_RS04065 (Q9R16_04065)	-	893421..893828 (-)	408	WP_053495123.1	pilin	-
Q9R16_RS04070 (Q9R16_04070)	pilA	893921..894349 (-)	429	WP_053495122.1	pilin	Machinery gene
Q9R16_RS04075 (Q9R16_04075)	pilC	894704..895963 (+)	1260	WP_053495121.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49641.90 Da
• Isoelectric Point: 6.4421

>NTDB_id=878192 Q9R16_RS04055 WP_014648199.1 889980..891353(+) (pilR) [Stenotrophomonas sp. 9]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAATEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=878192 Q9R16_RS04055 WP_014648199.1 889980..891353(+) (pilR) [Stenotrophomonas sp. 9]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACGGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAATGGCATCGAGCTGGTCAGCGAGATCGCGCAGCACTACCCGCGCACGCCAGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGATATCGCCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTGAACAACACTGAGCGCCCTGCACCCGGCCCCGCCG
CCGAACAGGGCGCACGCCTGCTGGGCGATTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCGGCGAGCTGATGGAAAGCGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTCGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAATCAGTGCGCGCGGTGGGCGCGGC
TACCGAGGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCATCGGTACTGGCACGGCTGGCCCGCAGCCATGGCCGCCCGACGCCGTTGCTGGCGCCGTCGGCGCTGGACGC
ACTGGCCCAGTACGCCTTCCCTGGCAACGTGCGCGAATTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAAGAAG
ACCGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCACACGCCGAGGCCGTG
GTGGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAGCTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.939	99.781	0.628
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49