Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   RHM61_RS02245 Genome accession   NZ_CP133779
Coordinates   470475..470906 (-) Length   143 a.a.
NCBI ID   WP_416200208.1    Uniprot ID   -
Organism   Undibacterium sp. CCC3.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 465475..475906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM61_RS02225 (RHM61_02225) - 465654..467237 (-) 1584 WP_322249504.1 M48 family metallopeptidase -
  RHM61_RS02230 (RHM61_02230) moaC 467302..467805 (+) 504 WP_322249505.1 cyclic pyranopterin monophosphate synthase MoaC -
  RHM61_RS02235 (RHM61_02235) - 467827..469563 (-) 1737 WP_322249506.1 PglL family O-oligosaccharyltransferase -
  RHM61_RS02240 (RHM61_02240) tfpZ 469573..470328 (-) 756 WP_322249507.1 TfpX/TfpZ family type IV pilin accessory protein -
  RHM61_RS02245 (RHM61_02245) comP 470475..470906 (-) 432 WP_416200208.1 pilin Machinery gene
  RHM61_RS02250 (RHM61_02250) pilA 471132..471569 (-) 438 WP_322249508.1 pilin Machinery gene
  RHM61_RS02255 (RHM61_02255) - 472226..472651 (-) 426 WP_322249509.1 pilin -
  RHM61_RS02260 (RHM61_02260) - 472898..473497 (-) 600 WP_322249510.1 FHA domain-containing protein -
  RHM61_RS02265 (RHM61_02265) - 473526..474332 (-) 807 WP_322249511.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  RHM61_RS02270 (RHM61_02270) sucD 474490..475371 (-) 882 WP_322249512.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14828.12 Da        Isoelectric Point: 8.4937

>NTDB_id=876685 RHM61_RS02245 WP_416200208.1 470475..470906(-) (comP) [Undibacterium sp. CCC3.4]
MNRMKKLQQGFTLIELMIVVAIIGILAAVALPAYQDYTVRARIAEVLGLMEGFKPTIVENLSNNNGSGAGTCSGVLGVTT
ATVNTSSITCVDATGVLTGVGTTKANGVSLSLTPRYSTGGPVTWACTTAAAANYRFVPSECRH

Nucleotide


Download         Length: 432 bp        

>NTDB_id=876685 RHM61_RS02245 WP_416200208.1 470475..470906(-) (comP) [Undibacterium sp. CCC3.4]
ATGAATAGGATGAAAAAACTACAGCAAGGCTTCACGCTGATTGAATTGATGATCGTTGTCGCGATTATCGGTATCTTGGC
CGCGGTTGCTTTGCCTGCCTACCAAGATTACACCGTCCGCGCCCGCATTGCTGAGGTATTGGGTTTGATGGAAGGCTTTA
AGCCGACTATCGTGGAAAACTTGTCCAACAACAATGGTTCCGGTGCCGGTACTTGCAGTGGTGTTCTCGGTGTGACAACG
GCGACAGTCAATACGTCGTCGATTACTTGCGTTGATGCAACTGGTGTACTGACAGGTGTCGGTACTACGAAAGCTAACGG
TGTGAGCTTGTCCTTGACGCCACGATATTCAACTGGCGGCCCAGTGACTTGGGCTTGTACTACCGCAGCAGCAGCGAACT
ACCGTTTCGTTCCTTCGGAATGCCGTCATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-31)

Pilin (bacterial filament) (Pilin)

(39-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

48.63

100

0.497
  pilA Ralstonia pseudosolanacearum GMI1000

40.606

100

0.469
  pilA2 Legionella pneumophila str. Paris

47.794

95.105

0.455
  pilA2 Legionella pneumophila strain ERS1305867

47.794

95.105

0.455
  pilE Neisseria gonorrhoeae MS11

40.123

100

0.455
  pilE Neisseria gonorrhoeae strain FA1090

39.752

100

0.448
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

31.915

100

0.42
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.562

100

0.413
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.726

100

0.406
  pilA/pilA1 Eikenella corrodens VA1

37.908

100

0.406
  pilA Pseudomonas aeruginosa PAK

37.5

100

0.399
  pilA Vibrio parahaemolyticus RIMD 2210633

39.259

94.406

0.371