Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   RDV59_RS02045 Genome accession   NZ_CP133476
Coordinates   376844..377341 (+) Length   165 a.a.
NCBI ID   WP_021143466.1    Uniprot ID   A0AB33ZG65
Organism   Streptococcus salivarius strain LMG 11489     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 371844..382341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS02045 (RDV59_02045) comX/sigX 376844..377341 (+) 498 WP_021143466.1 sigma factor Regulator
  RDV59_RS02050 (RDV59_02050) - 377449..378291 (-) 843 WP_037605435.1 mechanosensitive ion channel family protein -
  RDV59_RS02055 (RDV59_02055) tig 378434..379717 (+) 1284 WP_002885606.1 trigger factor -
  RDV59_RS02060 (RDV59_02060) rpoE 379875..380450 (+) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  RDV59_RS02065 (RDV59_02065) - 380703..382307 (+) 1605 WP_022496517.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20023.81 Da        Isoelectric Point: 4.9953

>NTDB_id=874644 RDV59_RS02045 WP_021143466.1 376844..377341(+) (comX/sigX) [Streptococcus salivarius strain LMG 11489]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=874644 RDV59_RS02045 WP_021143466.1 376844..377341(+) (comX/sigX) [Streptococcus salivarius strain LMG 11489]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAGGTTGTTAGGCCGATTGTACTTAAGGCTAGTCGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAAGAAGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGTTATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCCAATAGACAATGTTATATTGAAATTTCAGATATTGCTTTTTGTCTTCCAAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGGAAAAAGATGATTCGAGAGTTAAAATTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.